Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0091 ATGGGTCGTGGCAAGGTTGAGCTGAAAAGGATTGAGAATAGAAGTAACAGGCAAGTAACATTTTCTAAGAGGAGAACTGGGTTGCTGAAGAAGGCTAAGGAACTTTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATTTTCTCCAACACTGGAAAGCTTTCTCAGTTTTCCAGTTCTGATATGAACAGAACACTTTCAAGATACAACAAATGTGTTGATTCTACAGAAACTGCTGTTGTGGAACATAAGACAGAGGAAGAAGATTCTAAAATGGTGGAGATTCTAAGAGATGAAATTGAAAAACTTGAAAGAAAGAAACTAAGATTGCTTGGTAAGGACCTTAAGGGGTTGAGCTTAAAAGAGTTGCAAAATCTGGGGAAGCAACTTAATGAAGGGCTATTGTCTGTCACCAAGAGAAAGGAGGAATTAGTCACCGAGCAACTGGAGCAGTCTAGAGTGCAGGAACAAAGAGTTATGCTGGAGAATGAAACTTTGCGCGGACAGGTTATGGAACTTCGCTCCCTATTTCCTGTAACAGAAAATGGGGTCCCATCTTATCTTCAATATCAGAATATTGAAAGAAATAATACTTTTGTACTTGCTGGTGCCGCAAGTTCTAACTTGGCTAGTAATAGTGGAAATGATGGAGGAGATTCAGATACCACATTGCAATTGGGTTTTCTCAATGATTTTCATCACAAGAGGGGGATGGTGTCTGAAAAGGAAACCTCTTTGAATGACTCAGAGAGTGCTCTAGTATGA 765 0.4013 MGRGKVELKRIENRSNRQVTFSKRRTGLLKKAKELSVLCDAEVAVIIFSNTGKLSQFSSSDMNRTLSRYNKCVDSTETAVVEHKTEEEDSKMVEILRDEIEKLERKKLRLLGKDLKGLSLKELQNLGKQLNEGLLSVTKRKEELVTEQLEQSRVQEQRVMLENETLRGQVMELRSLFPVTENGVPSYLQYQNIERNNTFVLAGAASSNLASNSGNDGGDSDTTLQLGFLNDFHHKRGMVSEKETSLNDSESALV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0091 254 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 232 - -
Lal18g0091 254 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal18g0091 254 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Lal18g0091 254 PANTHER MADS BOX PROTEIN 1 232 - -
Lal18g0091 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal18g0091 254 Coils Coil 86 113 - -
Lal18g0091 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal18g0091 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal18g0091 254 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Lal18g0091 254 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Lal18g0091 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal18g0091 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal18g0091 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal18g0091 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal18g0091 254 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0091 Lal-Chr18 747164 751359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0091 1 249 MADS-box Gene Family AT5G13790 51.004 1.48e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal18g0091 K-box 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0091 - - zju:107417456 281.182