Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0068 ATGTCCACCGCCGATTCCTTTTCCGATCAAAAACTCTGCGGTTACCTCTGTGCCGTTCTCACTGTTACTCCTTCTCAACCCGACCCTTCCGTCATTCCACCTTTCAACGAATCATGCGAAATATTAAGCGGAAACGGCGCCGAAGTTGGGTTCCGGTGCCTAAACGGCATCGTTTTATCTCCGGTAGACGCGTCGTTACCGAATGAAACCGCTGATTCGGAACAATGTGATGACTCTGGTGGAGCCAGTTCGAAGCATAGCGGCTGCACTGTCATGCCGTCGAGCTCTAGGGTGAGGAAGATGAGGAAGATTGGGATGGTGAATGGAAGTATGAGTGTGATTCATCAGATTCATGCTTTGGTTAGCGGTAATTGTTTGAAGATTGATGCTCGTGTGGTGTGGGTTGAGGCGAGGGAGTGTGATATCGGAGAGGCGAGGGCGAGGGCTGTCGTGCTAGTTGATGTGTACCTTCCTGTTGACCTATGGAGTGGGTGGCAGTTCCCCAGGTTGAAGTCTGTCGCCGGTGCTATTTTTCGCCATTTGAGCTGTGATTGGAATGAGAGAAATTCAATGCTTTCTTGTCCAGGCTATTGTAAGAGGACTCATGGAGAAAATGAGAGCATTTGGAACCTTTCTGACTGTCATGTAATTGGGTGCAAGCTCCATTACCATGTGAGTGATTCTTCTAAGAAAAGGCTATTTGGACTTCATGAAATATTTAAGACAGTACCTGGTGTAGGAAAGCAGCAGAAGTCCAACAGTTCCAGGATAATACCTATGGATTACACTTGTACCTCTGGTATTTGGGAGATACCTGATGACATTTTAACTAAAATTCTAGCTTCCCTGCACCCACTGGACCTCACTAGGGTTTCTGAAACATGTCACCATTTTAGATCCTTGGCTGCCTCAGTAATGCCTTGTACCAAGTTAAATCTGTTTCCACATCAGCAAGCAGCAGTTGAGTGGATGTTGCACCGTGAGCGAAATGCTGAATTCTTGTCACATCCTTTATATGTGTCTCTCTCAACTGATGATGGCTTCAGTTTCCATGTAAATACTGTATCTGGTCAAATAGTCACTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAGCCCGGCTTGGGTAAGACTGTAACTGCTCTTTCCCTTATTGTGAAGACACAAGGTACATTGGCAGACCCACCAGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAACCAGAAATGTGGCTATTATGAGATCAGTGGTATTAACTTTACGAGTTGTAGCATGTTGGGCAAGAGGGATGTGTGCCAAGATGTTAGTAGAAATAATGAGAACCATGATCACTCTTCCAAAAGAGCCAGACTGCTGGGTCCAGCTGAGCAAAGCACTAAACTTCATGATTTATGTTCTGTGCAAGAACAAAAATCACCTGTAGATGCATGTTCTGAGGAATCTATGCCTGCAAGTAGAAGCACAAGGAGCTTGAGTCACATAAAGAAAACTCTACATTTCTGTTATGAAGAAGAAGCACCACTTTCCAAGGAAAGAAAAGTCGGCGAAAGTTCAATTCAAACAAAGCATATATCAGGTGTTACATCACGTTTATCTCAGAACAAGCTAGTTGATACTTCACATGGATGTGGAAAGAGTTACAAGCGGTCTGGGAAGTCTAAAATCGATTTTTTGGAGTACAATGATACTTGGATTCAGTGTGATTCTTGTCACAAGTGGCGAAAGCTTGCCGACAACAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAATACTGATCCTTTCTATCAGAGTTGTAGTGTCCCAGAACAATATTTCCAGAATAGCTCCAAGATAACTTACATGCCAGGATTTCACTTGAAAGGAACTCCAGGGGGTGACAAACAAAATGTTTCATTTTTTATTAATGTGCTTAAGGAGCACTACTCATTGATAAATTCTGAGACAAAGAAGGCCCTGACTTGGTTGGCTAAAATCTCAACTGAAAAGCTTGCAGGAATGGAAACAAATGGCATAAGGGGCCCTTTTTTAAACACCACCTCATGTAATGTGTTCCACAAAATATTTCAAGCATTTGGCTTCATGAAGAGGGTAGAGAAAGGTGTATGCAGGTGGTACTACCCACAGAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCCGAGAGCCATTAGATTTTCTTCGGTTGTACTTGTCAAGAGCAACCTTGGTAGTTGTTCCAGCGAACTTGGTTGATCATTGGAAAACACAAATATTAAAGCATGTCAGACCTGGTCAATTACGGGTTTATATTTGTATTGATCATCGGAAGCCATCTGCACATTGTCTGGCTTGGGATTATGATATTGTCATCACTACATTTAGCCGTCTGAGTGCAGAGTGGGGCCCCCGTAAGAGGAGTGTCTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGTCACACTCTTGGTTCAAGCCTAAACTTAACAAACAAGTTACAAATGGCTATTTCATTGATGGCTTCAAATCGTTGGATACTAACAGGAACTCCAACACCGAACACTCCTAATAGCCAACTCTCACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCATATGGACTGAATCACAAGTCATGGGAAGCTGGCGTTCTTAAGCCATTTGAGGCAGAGATAGAAGAAGGAAGGTCTCGTTTGTTGCATCTACTTCACAAATGCATGATTAGTGCAAGAAAATTAGATTTGCAAAGCATTCCACCATGCATCAAGAAAGTTGTTTTTCTAGATTTTAATGAGGAGCATGCTCGAAGTTACAATGAATTAGTACTCACAGTTCGGCGTAATATACTGATGGCTGATTGGAATGATCCTTCGCATGTTGAGAGTCTATTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACTATTAACAATGTCAGGCTCTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATGTTAGTTCAAAGTGGTCTAGATCCTGCTTCAGGGGAGTATACCTCCATACGATATAGTCTCCTGTTTGGTGGCTACTGTGTCAGGTGCAAGGAATGGTGCCGTCTTCCTCTAATTACACCATGTCGGCATTTGTTGTGCCTTGATTGTGTTTCTATAGACAATATGAAGTGTACATATCCTGGCTGTGGTAAATTATATGAGATGCAGAGTCCCGATACACTAGCTCGACCAGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGCAGGGTGTTTAATTAAGAATTCTGTTGCTTTAACTTGCATCTTTGACAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTCTCCTATCTTATCCAGAGACTGAATGCTTTGCAAGAAACCAATAAAGATTTGAGTTTCTATGAAGACCACATCAATTATGAGATGGATACTACGGATAATTTGCCTTTTCATATAAGACATACCAAATCATTCCCGGAATCTTCTTTAAGAAGCCAGGCCAATACGAAGCCCGAGAAAGTTCTGATATTTTCACAATTTCTTGAGCATATACACGTCATTGAACAACAGTTGACTATTGCTCGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCCTGCAACAAGAAGAAGTCATTAGCCATGTTCCAGAATGATTCAAGTTGCATGGCGCTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACACGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGCATGGGTGCTTCTCGTCCTATTCAAGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAACTTTTTCAGGATGCTGATGAATGTAGAAGTTTTCCATGTAAAGATGTTGCCAAATCTGAAGATGACATTGGGGGACGATTATATCGATCATTGCATGATTTTGCTGAAAGCAGTTATGTACTGAAACTTAGATTTGTGTATACTAGTACTGACAATCAGGAAGAGATTAATTTGTCTGGCTTGTCCAACAACAGATCATGGTCTCTAGCAACACCAACCCTTTTGGCTTCCACAAGTGCTGATATAACCATGTTTATTATTGACAAAACAAGACCAGTTCCAATCCTTTGA 4251 0.4194 MSTADSFSDQKLCGYLCAVLTVTPSQPDPSVIPPFNESCEILSGNGAEVGFRCLNGIVLSPVDASLPNETADSEQCDDSGGASSKHSGCTVMPSSSRVRKMRKIGMVNGSMSVIHQIHALVSGNCLKIDARVVWVEARECDIGEARARAVVLVDVYLPVDLWSGWQFPRLKSVAGAIFRHLSCDWNERNSMLSCPGYCKRTHGENESIWNLSDCHVIGCKLHYHVSDSSKKRLFGLHEIFKTVPGVGKQQKSNSSRIIPMDYTCTSGIWEIPDDILTKILASLHPLDLTRVSETCHHFRSLAASVMPCTKLNLFPHQQAAVEWMLHRERNAEFLSHPLYVSLSTDDGFSFHVNTVSGQIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIVKTQGTLADPPDGAQVVWCQHNGNQKCGYYEISGINFTSCSMLGKRDVCQDVSRNNENHDHSSKRARLLGPAEQSTKLHDLCSVQEQKSPVDACSEESMPASRSTRSLSHIKKTLHFCYEEEAPLSKERKVGESSIQTKHISGVTSRLSQNKLVDTSHGCGKSYKRSGKSKIDFLEYNDTWIQCDSCHKWRKLADNSMANSSAAWFCSMNTDPFYQSCSVPEQYFQNSSKITYMPGFHLKGTPGGDKQNVSFFINVLKEHYSLINSETKKALTWLAKISTEKLAGMETNGIRGPFLNTTSCNVFHKIFQAFGFMKRVEKGVCRWYYPQNLNNLTFDVAALGMALREPLDFLRLYLSRATLVVVPANLVDHWKTQILKHVRPGQLRVYICIDHRKPSAHCLAWDYDIVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLMASNRWILTGTPTPNTPNSQLSHLQPLLRFLHEEAYGLNHKSWEAGVLKPFEAEIEEGRSRLLHLLHKCMISARKLDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATINNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPASGEYTSIRYSLLFGGYCVRCKEWCRLPLITPCRHLLCLDCVSIDNMKCTYPGCGKLYEMQSPDTLARPENPNPKWPVPKDLIELQPSYKQAGCLIKNSVALTCIFDNWDPDWQSTSSSKVSYLIQRLNALQETNKDLSFYEDHINYEMDTTDNLPFHIRHTKSFPESSLRSQANTKPEKVLIFSQFLEHIHVIEQQLTIARIKYAGMYSPMHSCNKKKSLAMFQNDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIQVETLAMRGTIEEQMLELFQDADECRSFPCKDVAKSEDDIGGRLYRSLHDFAESSYVLKLRFVYTSTDNQEEINLSGLSNNRSWSLATPTLLASTSADITMFIIDKTRPVPIL 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0068 1416 Pfam CW-type Zinc Finger 571 614 IPR011124 GO:0008270
Lal18g0068 1416 SMART ultradead3 309 890 IPR014001 -
Lal18g0068 1416 CDD DEXDc_SHPRH-like 743 920 - -
Lal18g0068 1416 Gene3D - 565 615 - -
Lal18g0068 1416 PANTHER OS01G0952200 PROTEIN 67 1357 - -
Lal18g0068 1416 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 714 879 IPR014001 -
Lal18g0068 1416 SMART helicmild6 1216 1298 IPR001650 -
Lal18g0068 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 917 IPR027417 -
Lal18g0068 1416 Pfam SNF2-related domain 316 977 IPR000330 GO:0005524|GO:0140658
Lal18g0068 1416 ProSiteProfiles F-box domain profile. 265 317 IPR001810 GO:0005515
Lal18g0068 1416 CDD SF2_C_SNF 1201 1308 - -
Lal18g0068 1416 SUPERFAMILY F-box domain 263 304 IPR036047 GO:0005515
Lal18g0068 1416 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 67 1357 - -
Lal18g0068 1416 Gene3D - 728 923 IPR038718 -
Lal18g0068 1416 SMART fbox_2 271 311 IPR001810 GO:0005515
Lal18g0068 1416 MobiDBLite consensus disorder prediction 69 94 - -
Lal18g0068 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 394 IPR027417 -
Lal18g0068 1416 ProSiteProfiles Zinc finger CW-type profile. 566 617 IPR011124 GO:0008270
Lal18g0068 1416 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1193 1344 IPR001650 -
Lal18g0068 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1327 IPR027417 -
Lal18g0068 1416 MobiDBLite consensus disorder prediction 69 95 - -
Lal18g0068 1416 Pfam Helicase conserved C-terminal domain 1198 1298 IPR001650 -
Lal18g0068 1416 Gene3D - 1134 1342 IPR027417 -
Lal18g0068 1416 ProSitePatterns Zinc finger RING-type signature. 1057 1066 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0068 742 1323 RAD5 or RAD16-like Gene Family AT1G11100 24.359 7.97e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal18g0068 SNF2_N 6.8e-95 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0068 - - gmx:100803102 2087