Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0060 ATGGATGAAGAATGTTTGGGATCTGAAGAATTACCTGTTTTCAGTGATATTAGACGCTATTACTGTGAATACTGTGGTATTTGTAGATCCAAAAAAACACTTATCACTTCTCACATCAATTTGCACCACAAGGAATTGGAAGATGCAAAAGATGAAAAAAATGATGATGCTGATGGTGTAAAATCCAACAATACTTGTGATGAATGTGGTGCTACTTTCAAAAAACATGCTTATTTGTTGCAGCACATGCAAAGCCATTTGCTTGAGTTACTAAAATTATTGGAAAATTATCGACGTTATTGTGTGAAGCATTGGATCCCAGAAAAAGAACTCCAAAATGCACGAGGCAGGATGATTGGACTTGATGGATCAGTATCAGGTAGGGTGACCTCCTGTGAAGCTCCATCAAGAATGCCTCAGTCACGCTCTGTTCAAAACGAGAGGCCATATGTGTGTACTGTCGATAATTGTCAGGCAAGTTATAGACGAAAGGACCATTTAACTCGACACCTTGCACAGCATGAAGGAAAAACTTTTAAATGTCCAGTTGAGAATTGCAACCTTCTTTTCTCATTACAAAGTAATATGAAAAGACATGTCAAGGAAATGCATGATGAGAGTTCTACATCCACCAATGTTGAAGGTCAGAAGCAGTATGTATGCCCAGAAATAGGCTGTGGCAAACTGGAGTCAGTAGAGGTAGTGTGCTTAGAACCTGGTTGTATGAAGCATTTCACTAATGCCAAGTGCCTTAAAGAACATATAAATTCCTGCCATCTTTACACAGCCTGTGACATTTGTGGGACCAAGCAACTTAAGAAAAATATGAAGCGGCACCTCAGAATGCATGAAGCTGGCAGTTCTTCAGAGGTGTTTAAATGTGTTCATAAGGATTGTGACTGCACATTCTCAAGTAAATCTAATCTCAACAAGCATGAGAAGGTTGTGCACTTCAAAAACAAACCCTTTGTGTGTGGCTTCCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGAGAGACAAACATGAAAAAACTGGGAAACATGTTTTTACCCTTGGTGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGTGGAAGGAAGAGAATTTGTCCTACAATTGAAATGATAGTTAGGAAGAGAATTACACCACCTAGTCAATTAGAGAACTGGTTTCTTATGCAGGACAGTGATTAG 1209 0.3921 MDEECLGSEELPVFSDIRRYYCEYCGICRSKKTLITSHINLHHKELEDAKDEKNDDADGVKSNNTCDECGATFKKHAYLLQHMQSHLLELLKLLENYRRYCVKHWIPEKELQNARGRMIGLDGSVSGRVTSCEAPSRMPQSRSVQNERPYVCTVDNCQASYRRKDHLTRHLAQHEGKTFKCPVENCNLLFSLQSNMKRHVKEMHDESSTSTNVEGQKQYVCPEIGCGKLESVEVVCLEPGCMKHFTNAKCLKEHINSCHLYTACDICGTKQLKKNMKRHLRMHEAGSSSEVFKCVHKDCDCTFSSKSNLNKHEKVVHFKNKPFVCGFPDCGMRFAYKHVRDKHEKTGKHVFTLGDFEEADEEFRSRPRGGRKRICPTIEMIVRKRITPPSQLENWFLMQDSD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0060 402 Gene3D Classic Zinc Finger 8 90 - -
Lal18g0060 402 Gene3D Classic Zinc Finger 128 175 - -
Lal18g0060 402 Gene3D Classic Zinc Finger 176 214 - -
Lal18g0060 402 ProSitePatterns Zinc finger C2H2 type domain signature. 181 204 IPR013087 -
Lal18g0060 402 SUPERFAMILY beta-beta-alpha zinc fingers 65 174 IPR036236 -
Lal18g0060 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 209 IPR013087 -
Lal18g0060 402 SMART c2h2final6 20 42 IPR013087 -
Lal18g0060 402 SMART c2h2final6 179 204 IPR013087 -
Lal18g0060 402 SMART c2h2final6 262 283 IPR013087 -
Lal18g0060 402 SMART c2h2final6 292 317 IPR013087 -
Lal18g0060 402 SMART c2h2final6 64 86 IPR013087 -
Lal18g0060 402 SMART c2h2final6 323 349 IPR013087 -
Lal18g0060 402 SMART c2h2final6 150 174 IPR013087 -
Lal18g0060 402 SMART c2h2final6 234 259 IPR013087 -
Lal18g0060 402 SUPERFAMILY beta-beta-alpha zinc fingers 273 331 IPR036236 -
Lal18g0060 402 ProSitePatterns Zinc finger C2H2 type domain signature. 152 174 IPR013087 -
Lal18g0060 402 Gene3D Classic Zinc Finger 261 350 - -
Lal18g0060 402 Coils Coil 43 63 - -
Lal18g0060 402 ProSitePatterns Zinc finger C2H2 type domain signature. 236 259 IPR013087 -
Lal18g0060 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 322 IPR013087 -
Lal18g0060 402 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Lal18g0060 402 Pfam Zinc finger, C2H2 type 292 317 IPR013087 -
Lal18g0060 402 Pfam Zinc finger, C2H2 type 150 174 IPR013087 -
Lal18g0060 402 PANTHER ZINC FINGER PROTEIN 12 393 - -
Lal18g0060 402 ProSitePatterns Zinc finger C2H2 type domain signature. 294 317 IPR013087 -
Lal18g0060 402 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 12 393 - -
Lal18g0060 402 SUPERFAMILY beta-beta-alpha zinc fingers 177 205 IPR036236 -
Lal18g0060 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Lal18g0060 402 ProSitePatterns Zinc finger C2H2 type domain signature. 325 349 IPR013087 -
Lal18g0060 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lal18g0060 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 179 IPR013087 -
Lal18g0060 402 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0060 147 352 C2H2 Transcription Factor Family AT1G72050 47.636 1.08e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal18g0060 zf-C2H2 0.0023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0060 K09191 - gmx:100801812 496.893