Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0054 ATGACTGACATTGACAAGTGGAGTGACATCCTATATTGCTTTGAGCAGCTGAATGAACTAAGCAAGAGGAGATTAGAGGAATCCATGAAACTGAAGGAGATCATTGCTAAGGAGGAGATGGCCAAAAAATTAGCAAATTACCAAATAAGGAAATATCAAGCTGCAGCAAAAGAAGCTGAATATTTGAAAGAATGTGCTGAAAGAGAAGCTGTAGAAAGAAAAGAAGTGGAATTGAAAGCCATTCATGCTGCCAAAGAGAAAGTAAAGCTGAAGGATGCTCTTAGTGGTTCCTCGCCCCAGTACCGAAAATTTACATGGGATGAAATAATGTCTGCTACTTCATCTTTCTCGGAAGATCTTAAAATTGGAATGGGAGCATACGGAATCGTGTACAAGTGCAGTTTGTATCATACAACTGTTGCTGTTAAAGTTCTCCATTCTATTGGGAACCACAAAACCAAACAATTCCAGCAGGAGCTAGAAATATTGAGCAAAATTCGTCATCCGAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGTCTTGTTTATGAATATATGGAGAATGGTAACTTGGAGGAGAGATTACTGCAAAAAAACAGTACTGCCCCAATCCCATGGTTTGAGAGGTATCGGATAGCTTGGGAAATTGCGTCGGCTCTTGCCTTTCTTCACAGCTCAAAGCCAACGCCTATCATTCACCGTGACTTGAAACCAGCGAACATCTTGCTTGGTCGTAACCTAGTCAGCAAGATCAGTGATGTTGGCCTTTCTATAATGCTCAATTCGGATAATTTGTGTACCATGTATAAGGACACTGAGCCCATTGGAACACTCTGCTACATAGATCCTGAGTATCAAAGGAGTGGGGTAATATCTCCAAAATCTGATGTTTATGCCTTTGGAATGGTGATCTTACAGCTATTGACAGCAAAACCAGCAATAGCACTTACTTATGTGGTTGAAACAGCAATTGATGCTGAGAATTTAACAGACATATTGGATCCAAAGGCAGGGACTTGGCCGCTTCAAGAAACACTGGACTTAGCCCGATTAGGACTGAAATGCGCAGAACTTCAGCGTATAGACAGGCCCGATTTGAAAGATCACGTCCTTCCGATATTAGAGAGATTGAAAGACGTTGCTGATAGAGCCCAACACTCGGCTTCAATAGTTACTATTAAACCCAAACCTCCTAATCATTTTATGTGTCCAATTCTTCAGGATGTGATGGATGATCCTCGTGTTGCAGCGGATGGATATACATATGATCATAAAGCAATCCAAAAGTGGTTTCAAGAGAATCACAAATCACCCATCACAAATATGCCTTTACCTCATAAGAATCTAATTCCAAATTACACACTTCTATCAGCAATTATAGAGTGGAAGTCTAGAAATATTTATGTATAA 1419 0.4031 MTDIDKWSDILYCFEQLNELSKRRLEESMKLKEIIAKEEMAKKLANYQIRKYQAAAKEAEYLKECAEREAVERKEVELKAIHAAKEKVKLKDALSGSSPQYRKFTWDEIMSATSSFSEDLKIGMGAYGIVYKCSLYHTTVAVKVLHSIGNHKTKQFQQELEILSKIRHPNLLLLLGACPDHGCLVYEYMENGNLEERLLQKNSTAPIPWFERYRIAWEIASALAFLHSSKPTPIIHRDLKPANILLGRNLVSKISDVGLSIMLNSDNLCTMYKDTEPIGTLCYIDPEYQRSGVISPKSDVYAFGMVILQLLTAKPAIALTYVVETAIDAENLTDILDPKAGTWPLQETLDLARLGLKCAELQRIDRPDLKDHVLPILERLKDVADRAQHSASIVTIKPKPPNHFMCPILQDVMDDPRVAADGYTYDHKAIQKWFQENHKSPITNMPLPHKNLIPNYTLLSAIIEWKSRNIYV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0054 472 SUPERFAMILY Protein kinase-like (PK-like) 97 372 IPR011009 -
Lal18g0054 472 ProSitePatterns Protein kinases ATP-binding region signature. 122 143 IPR017441 GO:0005524
Lal18g0054 472 ProSiteProfiles Protein kinase domain profile. 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0054 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Lal18g0054 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 471 IPR013083 -
Lal18g0054 472 Coils Coil 49 69 - -
Lal18g0054 472 Gene3D Transferase(Phosphotransferase) domain 1 189 397 - -
Lal18g0054 472 SMART serkin_6 116 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0054 472 ProSiteProfiles U-box domain profile. 399 472 IPR003613 GO:0004842|GO:0016567
Lal18g0054 472 Pfam U-box domain 401 468 IPR003613 GO:0004842|GO:0016567
Lal18g0054 472 PANTHER OS02G0152300 PROTEIN 15 466 - -
Lal18g0054 472 Pfam Protein tyrosine and serine/threonine kinase 121 371 IPR001245 GO:0004672|GO:0006468
Lal18g0054 472 SUPERFAMILY RING/U-box 398 469 - -
Lal18g0054 472 Gene3D Phosphorylase Kinase; domain 1 94 188 - -
Lal18g0054 472 SMART Ubox_2 403 465 IPR003613 GO:0004842|GO:0016567
Lal18g0054 472 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 15 466 - -
Lal18g0054 472 CDD RING-Ubox_WDSUB1_like 404 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0054 Lal-Chr18 436332 438318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0054 16 467 U-box Gene Family AT4G25160 61.184 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal18g0054 PK_Tyr_Ser-Thr 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0054 - - gsj:114409387 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1208 20 16564462 16571159 Lal18g0054 18 436332 438318 LSH
Lal1g1259 1 13849054 13854465 Lal18g0054 18 436332 438318 LSH