Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0053 ATGGCTTTGAGATTTATAGCGATTTCCGCAATTTCTACGGTGCTAAGCTTTGTGGGTCTGCAGTTTTGCACAGACTTCTCATTATATACAGTTAAATCAGATGGAGTGTTTGGCTGGAATTTAGTGCACTTGGACAATGCCAACCAATACATCGAGTTACCTTTGGGTTTGTACACTACCATAGGGCTACTGGCAAATTGCACAGCCAATGTATTTATCCTTCTCAATCTTTGTCTTTCGGCTATGTTCTTCACAGAGTTGTATTCTTCTGAAACACGTAAACTGATTGAGCGTCTCATTTATTATGTTATTTACAAGGGAACATTTCTACCACTGATTGTGCCACCAACTATATATCAGGCTGGTCTGTGGTCAACTTGGCTGGCAGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTAGCCAGAGATCGTTTAGAGCGGCTGAATGCATCTCCATCTGCTACACCCTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTAGTGGTTGATGTTTTCTGGATAAGGCTATGTCTGGCGATATATAGAACACAAAGCTCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGGCATTTTGGTACATGGGTTTCAGTTAGTTGATATATGGTGCAACAACAGTGATTGCCGAAGGCCTAAACTATTTGACAAATTAGCAGCAGGTTCACTATTGGAATGGAAGGGAATTCTTATTCGAAACTTGGGATTTTTCCTCGACATGGCAACATTTTTTATGGCACTAGGCCATTACCTGTATATATGGCGGCTTCATGGCATGGCATTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGTGCATTACTTAGCGCAATTCTAAATCGCATAAAAGGCTTTATTAGGCTAAGGATAGCTCTAGGAGCTCTACATGCAGCTCTTCCCGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAGAAGCTAAACTGCAGTCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCTTGACTGAGATGTATACTTGTCCTACATGCCGAAAGCCCCTTTTTGCAGGCCGACCTGAAAATGAAGCTAACTCAGCTAGGGAGGAGATATCTAGTGATGAGCAACTTGCGCGCCAAATAAGTGCAGGACTTGATCGGACAAACTCTGCTAGACATACCATTCCTGCAGGGTTGTATCCCAATCAGACACCGAATTCTACCGAAGGTGTTCCTTGGAGGGGTGCAGGACTGGATGCAGGCTGGTTGCACTCATGGCCAAATCAAGGTGTTGATGGAGCTGGTCCATCTACTGCAATCAGAACAGTTGGACTAGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGAATGCCTTTGAAGATGCTGCTTGGAGCCTATGGCCTATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAACCATTCCTTCCCCTGGTGGAAGATTGCCAGGAGGAAACGGCAGTTTACATATAAGAACTGCTTCGCAATCTGCAAATGTCGATGTGGCAAATATACTTGCTATGGCTGACACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACTTAATATTCCAGGACTTGCAGCGGACAAATTCTGTCTCGGTTACTGTGAATAATCTTCTCCAACTTTGA 1746 0.4318 MALRFIAISAISTVLSFVGLQFCTDFSLYTVKSDGVFGWNLVHLDNANQYIELPLGLYTTIGLLANCTANVFILLNLCLSAMFFTELYSSETRKLIERLIYYVIYKGTFLPLIVPPTIYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVLVVDVFWIRLCLAIYRTQSSSLFLLLFFEPFSIAFETLQGILVHGFQLVDIWCNNSDCRRPKLFDKLAAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAILNRIKGFIRLRIALGALHAALPDATTEELRAYDDECAICREPMAKAKKLNCSHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENEANSAREEISSDEQLARQISAGLDRTNSARHTIPAGLYPNQTPNSTEGVPWRGAGLDAGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQNAFEDAAWSLWPINPSQASASGSTIPSPGGRLPGGNGSLHIRTASQSANVDVANILAMADTVREVLPHIPDDLIFQDLQRTNSVSVTVNNLLQL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0053 581 SMART ring_2 333 374 IPR001841 -
Lal18g0053 581 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 580 - -
Lal18g0053 581 CDD CUE_RIN3_plant 542 579 IPR035667 -
Lal18g0053 581 SUPERFAMILY RING/U-box 320 381 - -
Lal18g0053 581 Pfam CUE domain 545 581 IPR003892 GO:0043130
Lal18g0053 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 383 IPR013083 -
Lal18g0053 581 ProSiteProfiles CUE domain profile. 541 581 IPR003892 GO:0043130
Lal18g0053 581 Gene3D - 540 580 - -
Lal18g0053 581 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 580 - -
Lal18g0053 581 Pfam Ring finger domain 331 375 IPR001841 -
Lal18g0053 581 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0053 Lal-Chr18 425401 436095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0053 57 416 C3H Transcription Factor Family AT3G16090 26.221 2.07e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0053 K10636 - gmx:100819656 1009.59