Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0051 ATGGGAAGCCTAGAGGAACTGAAGAAGGAGAACATTGATCTTTTTGCTAAGTTGATTATGATGAATGATGTTTCTTACATGATTATGTTGCAGGAACGGATACCTGTGGACCAAGTTTTTGCACAACTGAAATGTTCAAAGGAGGGTCTTACAAATGAGGAAGGACAAAGGAGATTGGAACTTTTTGGGCCCAACAAGTTGGAAGAAAAGAAGGCAATGAATTTATCTCTATCTAGCTATACTTTGATAAACATTTCTTGCATACAGGATAATAAGTTTCTGAAGTTCTTGGGGTTTATGTGGAACCCTCTGTCATGGGTTATGGAAGCAGCTGCTATCATGGCCATTGCTTTGGCAAATGGAGGGGGCAAGCCACCAGATTGGCAGGACTTTGTGGGAATTATAGCATTGCTTGTTATCAATTCCACCATTAGTTTTATAGAAGAAAACAATGCAGGAAATGCTGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAGACCAAGCAAGGAGAGATTGAAGCTGTTGTGATTGCTACTGGAGTGCACACCTTCTTCGGTAAGGCTGCTCACTTGGTGGACAGTACTAACCAAGTAGGACACTTTCAAAAGGCTAGAGACGGCATTACCGAAGTGCATTTCTTGCCCTTTAATCCGGTGGACAAGCGTACAGCTATAACATACATTGACTCTAAGGGCAATTGGCATAGAGTAAGCAAGGGAGCACCAGAGCAGATTATAGAACTTTGCAATCTCCGGCCCGATGTGAAGAAGAGAGCTCATTCCATTATTGACAAATTTGCTGACAGGGGTCTCCGTTCCCTTGCTGTTTCCAAACAAGAAGTTCCAGAGAAGTCCAAGGATAGTCCAGGAGGACCATGGCAATTTGTAGGACTCTTGCCTCTCTTTGATCCACCTAGGCATGATAGTGCAGAGACTATTCGCCAAGCTCTTCATCTTGGAGTGAATGTTAAGATGATAACCGGTGATCAGCTAGCTATCGGTAAGGAGACCGGTCGCAGGCTTGGTATGGGAAGTAACATGTACCCTTCTTCTTCTCTCCTTGGTGAGCACAAGGATGAGTCTATTTCTGGACTTCCAATTGATGAGCTTATTGAGAAGGCTGATGGTTTTGCTGGTGTCTTTCCTGAACACAAATATGAGATTGTGAAGAGACTCCAAGATAGAAAACACATATGCGGTATGACAGGAGATGGTGTCAATGATGCTCCAGCCCTAAAAAAGGCAGATATTGGAATTGCAGTGGCTGATGCAACCGATGCAGCTCGTGGTGCATCCGACATAGTCCTGACTGAACCTGGTTTGAGTGTGATTATTAGTGCAGTTTTGACAAGCAGATCAATTTTCCAAAGAATGAAGAACTACACCATTTATGCTGTTTCCATAACAATCCGAATTGTTCTCGGCTTTATGCTGCTAGCTCTTATCTGGAAATTTGATTTCTCACCTTTTATGGTTTTGATCATTGCCATACTAAATGACGGGACAATTATGACCATTTCCAAGGACAGGGTGAAGCCATCTCCCTTGCCCGATTCATGGAAGCTGAATGAGATTTTTGCCACAGGAATAGTGCTTGGTGCCTACCTTGCTATCATGACTGTTGTCTTCTTCTGGCTTATCCATGGAACTAATTTCTTCTCGGAAAAATTTGGGGTCAGATCTATCAGGTTTGAAGAGGGTGAGCTGACAGCAGCTGTTTACCTTCAAGTGAGTATTGTTAGTCAGGCTCTCATCTTCGTTACTCGGTCAAGAAGCTGGTCTTTCGTAGAACGTCCTGGTTTCTTGCTTCTCACAGCCTTTGGCATAGCACAATTGGTTGCTACACTCATAGCTGTCTATGCAAACTGGGAATTTGCAAAGATGAAAGGAATTGGTTGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTATTTTCTATTTCCCATTGGATGTTCTTAAATTTGTCATCCGATATGTATTGAGTGGAAAGGGATGGAGTAATATCACTGAGAACAAGATTGCTTTTACAACAAAGAAGGATTATGGAAAGGAAGAGCGAGAAGCACAATGGGCTACGGCTCAACGTACGCTACACGGACTAAATCCTCCCGGAACAGAACAGATATTGCAGGAACACAATACCTACAGCGAGTTGTCTGAAATAGCGGAACAGGCTAGGAAACGTGCTGAAGTTGCAAGGTTGAGGGAACTTCACACATTGAAGGGACATGTTGAATCTGTTGTGAAACTGAAGGGACTTGACATTGACACAATTCAGCAGCATTACACTGTCTGA 2298 0.4343 MGSLEELKKENIDLFAKLIMMNDVSYMIMLQERIPVDQVFAQLKCSKEGLTNEEGQRRLELFGPNKLEEKKAMNLSLSSYTLINISCIQDNKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMAGLAPKTKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKARDGITEVHFLPFNPVDKRTAITYIDSKGNWHRVSKGAPEQIIELCNLRPDVKKRAHSIIDKFADRGLRSLAVSKQEVPEKSKDSPGGPWQFVGLLPLFDPPRHDSAETIRQALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESISGLPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRSIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGAYLAIMTVVFFWLIHGTNFFSEKFGVRSIRFEEGELTAAVYLQVSIVSQALIFVTRSRSWSFVERPGFLLLTAFGIAQLVATLIAVYANWEFAKMKGIGWGWAGVIWLYSIIFYFPLDVLKFVIRYVLSGKGWSNITENKIAFTTKKDYGKEEREAQWATAQRTLHGLNPPGTEQILQEHNTYSELSEIAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0051 765 PRINTS H+-transporting ATPase (proton pump) signature 259 277 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal18g0051 765 PRINTS H+-transporting ATPase (proton pump) signature 374 390 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal18g0051 765 PRINTS H+-transporting ATPase (proton pump) signature 402 418 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal18g0051 765 PRINTS H+-transporting ATPase (proton pump) signature 433 458 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal18g0051 765 PRINTS H+-transporting ATPase (proton pump) signature 574 595 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal18g0051 765 PRINTS P-type cation-transporting ATPase superfamily signature 297 308 - -
Lal18g0051 765 PRINTS P-type cation-transporting ATPase superfamily signature 319 329 - -
Lal18g0051 765 PRINTS P-type cation-transporting ATPase superfamily signature 402 421 - -
Lal18g0051 765 PRINTS P-type cation-transporting ATPase superfamily signature 425 437 - -
Lal18g0051 765 Gene3D - 170 308 IPR023299 GO:0000166
Lal18g0051 765 SUPERFAMILY Calcium ATPase, transmembrane domain M 33 661 IPR023298 -
Lal18g0051 765 Coils Coil 716 736 - -
Lal18g0051 765 Gene3D - 714 765 - -
Lal18g0051 765 PANTHER CALCIUM-TRANSPORTING ATPASE 203 737 - -
Lal18g0051 765 PANTHER CALCIUM-TRANSPORTING ATPASE 3 168 - -
Lal18g0051 765 PANTHER CALCIUM-TRANSPORTING ATPASE 168 203 - -
Lal18g0051 765 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 203 737 - -
Lal18g0051 765 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 168 203 - -
Lal18g0051 765 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 3 168 - -
Lal18g0051 765 Pfam Cation transporter/ATPase, N-terminus 34 72 IPR004014 -
Lal18g0051 765 SMART Cation_ATPase_N_a_2 30 120 IPR004014 -
Lal18g0051 765 Pfam haloacid dehalogenase-like hydrolase 231 416 - -
Lal18g0051 765 Gene3D - 99 169 - -
Lal18g0051 765 Gene3D - 404 660 - -
Lal18g0051 765 SUPERFAMILY HAD-like 294 448 IPR036412 -
Lal18g0051 765 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 377 487 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0051 Lal-Chr18 377810 384430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0051 198 765 Primary Pumps ATPases AT3G42640 81.690 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0051 K01535 - gmx:100818997 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1238 20 16873127 16881644 Lal18g0051 18 377810 384430 LSH