Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0043 ATGCACAAGGAGAAGCTGTTTTTTGAAATCAACCAGCAAGCAAAATGTCAGGGTGTTGTTGCAGCTGAGCCAGCTGCCGCTGCTGCTGCTTCAGTTATTCCCGGCGAGCCTATGGACATCCAGACCGCCTTGCAGCTTGTGCTGAGAAAGTCACTTGCTTATGGTGGTCTCGCCCGAGGCCTTCATGAAGCCGCAAAGGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGATTGTGACCAACCCGACTATGTGAAACTCGTCAAGGCCCTCTGTGCTGAACACAATGTTAGTCTGCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAGTGGGCTGGCTTGTGCAAGATCGATTCCGAGGGAAAAGCTAGGAAGGTAACTGGCTGCTCATGTGTGGTTGTCAAGGATTTCGGGGAGGAACACGAAGCGTACAATGTTGTTCTGCAGCATGTTAAGGCTAACTGA 474 0.5063 MHKEKLFFEINQQAKCQGVVAAEPAAAAAASVIPGEPMDIQTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0043 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 43 136 IPR004038 -
Lal18g0043 157 ProSitePatterns Ribosomal protein S12e signature. 43 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal18g0043 157 PANTHER 40S RIBOSOMAL PROTEIN S12 21 156 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal18g0043 157 Gene3D - 24 157 IPR029064 -
Lal18g0043 157 PANTHER 40S RIBOSOMAL PROTEIN S12 21 156 - -
Lal18g0043 157 PRINTS Ribosomal protein S12E family signature 47 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal18g0043 157 PRINTS Ribosomal protein S12E family signature 61 77 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal18g0043 157 PRINTS Ribosomal protein S12E family signature 102 123 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal18g0043 157 PRINTS Ribosomal protein S12E family signature 127 140 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal18g0043 157 SUPERFAMILY L30e-like 37 155 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0043 Lal-Chr18 314818 317270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0043 33 157 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 5.11e-67 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0043 K02951 - gmx:100500093 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1249 20 17009934 17013233 Lal18g0043 18 314818 317270 LSH
Lal1g1217 1 13418710 13421110 Lal18g0043 18 314818 317270 LSH