Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0039 ATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACCTTAATTCCTATAGAGCTCATGAAGAGGTTACTAAAAGGGAGGTAGAAAGCAAATTATTCTCATTGGGGATGACCATGTTTCCTGTGAAAGATGAGTCTACTATTATGAAGTTGGAAATGGAAGTGAAGAGGGTGAGTGCAGAAAACAAGAAATTGGTGGAAATGCTGTCAGTGGTGTGTGAGAATTACAACAATTTGAGAAGCCAATTGATGGAATATATGAGCAAGAATCCTGAAAAGGAACTTAGCCCATCATCTTCAAAGAAAAGAAAGTCTCAAAGTAGCAATAACAATAGTAACTTGATGGGAATTAATAACTCAGAAAGTAGCTCCACCAATGAAGAATCTTGCAAGAAACAAAGGGAAGAACCACAAATTTCAACAGTTTATGTCAAGACAGAAGCATCTGATACAAGCCTTGTTGTGAAAGATGGATATCAATGGAGGAAGTATGGACAAAAGGTGACTAGAGATAATCCTTGTCCAAGAGCTTACTTCAAATGTTCTTTTGCTCCAACCTGCCCTGTGAAAAAGAAGGTGCAAAGAAATGTAAATGATCAATCTGTTCTGGTTGCAACTTATGAAGGGGATCACAATCATACTAACCCTTTCCAAATGCTGGCACCAAAAGTTACCCTTGACTTGGTAAAATCTAAGTGCAGCAATGATTCAAAGATCACAAAACCAAAAATAAATTCATCTCAAGTACCACATATGATGGTGGAACAAATGGCTACTTCATTGACCATGGATCCTAATTTCAGAGAAGCACTTGTGGCAGCTATATCAGGCAGATTCTTGCAAAACAATTAA 855 0.3754 MDCSSWINTSLDLNLNSYRAHEEVTKREVESKLFSLGMTMFPVKDESTIMKLEMEVKRVSAENKKLVEMLSVVCENYNNLRSQLMEYMSKNPEKELSPSSSKKRKSQSSNNNSNLMGINNSESSSTNEESCKKQREEPQISTVYVKTEASDTSLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRNVNDQSVLVATYEGDHNHTNPFQMLAPKVTLDLVKSKCSNDSKITKPKINSSQVPHMMVEQMATSLTMDPNFREALVAAISGRFLQNN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0039 284 Coils Coil 49 69 - -
Lal18g0039 284 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g0039 284 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 223 284 IPR044810 GO:0003700
Lal18g0039 284 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 220 IPR044810 GO:0003700
Lal18g0039 284 MobiDBLite consensus disorder prediction 102 127 - -
Lal18g0039 284 MobiDBLite consensus disorder prediction 91 138 - -
Lal18g0039 284 Gene3D WRKY domain 139 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal18g0039 284 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g0039 284 SUPERFAMILY WRKY DNA-binding domain 153 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal18g0039 284 Pfam WRKY DNA -binding domain 157 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g0039 284 PANTHER TRANSCRIPTION FACTOR 1 220 - -
Lal18g0039 284 PANTHER TRANSCRIPTION FACTOR 223 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0039 Lal-Chr18 267023 268642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0039 4 284 WRKY Transcription Factor Family AT1G80840 46.417 4.78e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal18g0039 WRKY 4.1e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1252 20 17042907 17044689 Lal18g0039 18 267023 268642 LSH