Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0023 ATGGGTGAAGTGAAGGCAGTTGTCCCAGAGTCAGTGCTGAAGAAGCAGAAGAGGGAGGAGGAATGGGCTTTGACCAAAAAGACAGAGTCTGAAGCTGCAAAGAAGAAGAGAGCTTTGAGCCGTAAGCTTATCTTCAACCGGGCCAAGCAGTATGCCAAGGAATACAGTGATCAGGAGAAGGAATTGATCAGGTTGAAGCGTGAGGCAAAACTGAAGGGTGGATTTTATGTTGATCCAGAGGCCAAGCTATTGTTCATTATTCGCATCCGTGGTATTAATGGCATGGACCCCAAGACAAGGAAGATCCTCCAGCTGTTGCGATTGAGACAGGTTTTCAATGGTGTATTCCTTAAAGTGAACAAGGCCACAGTGAACATGTTGCGCAGAGTTGAGCCTTATGTTACTTATGGTTACCCGAATCTGAAAAGTGTGAGAGAACTGATTTACAAGAGGGGCTATGGTAAGCTAAACAAGCAGAGAATTGCCCTCACTGACAACTCCATCATTGAGCAGGGACTGGGCAAGCATGGAATCATATCAACTGAAGATCTTATCCATGAGGTCCTAACAGTTGGACCCCATTTTAAGGAGGCAAACAACTTCCTATGGCCATTTAAGCTGAAAGCACCATTGGGTGGCTTAAAGAAGAAGAGGAATCACTATGTTGAAGGAGGAGATGCTGGAAACAGGGAGAATTACATTAATGAGCTAATCAGGAAAATGAATTAG 729 0.4458 MGEVKAVVPESVLKKQKREEEWALTKKTESEAAKKKRALSRKLIFNRAKQYAKEYSDQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINGMDPKTRKILQLLRLRQVFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQGLGKHGIISTEDLIHEVLTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRKMN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0023 242 ProSitePatterns Ribosomal protein L30 signature. 102 134 IPR018038 -
Lal18g0023 242 TIGRFAM uL30_euk: 60S ribosomal protein uL30 9 242 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lal18g0023 242 Gene3D - 185 242 IPR036919 -
Lal18g0023 242 Gene3D - 83 184 IPR036919 -
Lal18g0023 242 Pfam Ribosomal L30 N-terminal domain 8 79 IPR012988 -
Lal18g0023 242 CDD Ribosomal_L7_archeal_euk 83 242 IPR035808 -
Lal18g0023 242 Pfam Ribosomal protein L30p/L7e 84 134 IPR016082 -
Lal18g0023 242 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 4 242 - -
Lal18g0023 242 PANTHER 60S RIBOSOMAL PROTEIN L7 4 242 IPR039699 -
Lal18g0023 242 SUPERFAMILY Ribosomal protein L30p/L7e 83 242 IPR036919 -
Lal18g0023 242 Coils Coil 48 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0023 Lal-Chr18 161613 164289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0023 2 242 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.647 5.24e-155 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0023 K02937 - gmx:100813342 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0023 18 161613 164289 Lal18g0023 18 161613 164289 ECH