Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0022 ATGACTACTTCTACCACCACCGATGATGATAATAATAACAACAACAACTCCGCCCTTCATCATCCACACTTCACCGTCACTATCAACGCCGCAAGGCACTCTCACACCGTCAACAATCATCAAGAACATCATCACGATGATGATGATGATGATGACGACCAGAATGATCCTTTTCATATTACTCAAACTAAGAATGCTCCTCTCGAGACTCTTCGACGTTGGAGACAAGCAGCACTGGTGCTTAATGCGTCCAGGCGTTTTAGATATACACTGGACTTGAAAAAGGAAGAGGAGAAAGAGAAAAAGATTAGATTGATTAGAGCCCACGCACAAGTCATCAGAGCAGCACTGCTTTTCAGATTGGCGGGTGAACGGGAACTAGTGATAAATACAGCGGTGACGCCTCCAACTCCAGTTGGTGGTGACTATGCGGTTGGGCTTGAGCAACTTACTTCAATGTCTAAGGATCAGAATGTTAAAGGCTTATCAAATTTACTAAAATCAAATCCGGAGAAAGGAATCAGTGGAGATGATGCTGATCTATCAAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGAAGAAGTTTCTGGAGGTTTTTATGGGAAGCCTGGCAAGATCTGACTCTTATAATATTGATTATAGCAGCTATAGTGTCACTAGTACTTGGGATAAAAACAGAGGGTTTGGAAGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAATTTAAGAATTTGAATGCAGAAAAACAAAATATACAATTGGAGGTCATTAGAGGTGGCAGAACAATTAAAATATCAATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGACCAGGTACCTGCCGATGGAGTGTTAATCACCGGCCATTCACTTGCTATTGATGAATCCAGCATGACTGGTGAAAGCAAGATTGTTCACAAGGATCACAAATCACCCTTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGTTATGCTGGTAACCAGCGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTGCAGGTACGTTTGAATGGAGTGGCAACTTTTATTGGAGTAGTTGGGCTTAGTGTTGCAGTTTTGGTGCTTGCAGTCCTCTTGGGCAGATTCTTTTCTGGCAACACGAAAGACTTGGATGGAAATACACAATTCACTGCCGGGAAGACTAGTATTAGTGATGCAGTAGATGGGGTCATCAAAATTTTTACCATGGCTGTCACAATTGTAGTTGTTGCAGTGCCTGAAGGTCTACCTCTGGCTGTTACCTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCTTTGGTACGAAGACTGTCAGCCTGCGAAACTATGGGCTCTGCTACAACAATATGCAGTGATAAGACAGGGACATTGACCTTGAATCAGATGACTGTAGTCGAGGCATATGCTGGGAGGAAGAAGTTAAACCCAGTGGATGACTCATCAAAGTTGCATCCAGAAGTTTTATCCCTGTTAAATGAGGGCATTTCACAGAATTCAACTGGAAATGTTTTTGTACCCAAGGATGGCGGAGAGACAGAGGTGACAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGTATGAATTTTGATCTTATCAGATCAAATACGACAATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTCTGAAGCTGGTGGACTCTGGAGTACATATTCATTGGAAAGGAGCTGCAGAGATTGTTCTAGGAGCGTGTACTCAGTATCTTGATTCAAATGGCGATTTGCAATCCATTGAAAAAGAGAAGGCATTTTTCAGGGAGGCGATTGATGATATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCATACAGATCATATGAATTAGACAAAGTTCCATCTAATGAGGAGGAATTGGACCAGTGGTCCTTACCAGAAGAAGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAAGAGGCTGTGAGAGTATGCACTGATGCTGGTGTTAAGGTACGCATGGTTACTGGAGACAACCTCCAGACAGCAAAGGCAATAGCTCTGGAGTGTGGGATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGAGTTTCCGGGAACTACCTGAAAAAGAAAGGGAACTGGTTGCTAAGAAAATAACGGTGATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTACGTAAAGGAGGTGAAGTTGTTGCTGTGACTGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTGCTATGGGCATTGCAGGAACTGAAGTTGCAAAAGAAAGCTCGGATATTATAATCTTGGATGATAACTTTGCATCAGTAGTAAAGAGGAGATCGTTAGAAGTCCTAGTAAGGAGAGTAGATCAAATGAAGGTTAGTCCCATTTCTAGAGGTAGAGGGGGGCTAGGAAAAACGGTTACGAAAGGTTTAGAGATTAATGCTTTGACAATGGAGGTTGTCCGCTGGGGCCGATCTGTATATGCAAACATTCAGAAATTTATCCAGTTCCAGCTTACTGTTAACGTTGCTGCTCTTGTAATAAATGTTGTCGCAGCAATAAGTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCACTTGCCACAGAACCACCAACAGACCAGCTAATGAACAGATCGCCAGTTGGCCGAAGGGAACCTCTTATTACGAATATCATGTGGAGAAACTTGCTTGTACAGGCTGTCTACCAAATTGCTATTCTTCTAGTTCTTAAGTTTAGTGGTGAAAGTATTCTACCTAAACAAGATACTAGAGCTCATGATATTCAAGTGAAGAATACTTTAATTTTCAATGCATTCGTCATGTGCCAAATATTCAATGAGTTCAATGCTCGGAAACCTGAAGAAATGAATGTCTTCCGAGGAGTAACTAAGAACAAACTCTTCGTGGGAATTGTTGGAGTGACCTTTATACTTCAAATAATCATCATTGAGTTCCTTGGAAAGTTCACCTCAACAATTAGGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTATTATGGGCATTTTCAGTTGGCCTCTTGCTATAGCTGGAAAATTCATTCCAGTTCCAAAAACACCATTGTCCCGATTTGTCTTGAGGCCACTTCGGCGATTGAGGAGGTCTCGTGCTGCTGCTGCCGCAGCACAACAATAG 3420 0.4254 MTTSTTTDDDNNNNNNSALHHPHFTVTINAARHSHTVNNHQEHHHDDDDDDDDQNDPFHITQTKNAPLETLRRWRQAALVLNASRRFRYTLDLKKEEEKEKKIRLIRAHAQVIRAALLFRLAGERELVINTAVTPPTPVGGDYAVGLEQLTSMSKDQNVKGLSNLLKSNPEKGISGDDADLSKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAIVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFKNLNAEKQNIQLEVIRGGRTIKISIFDIVVGDVIPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKSPFLMSGCKVADGVGVMLVTSVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGVVGLSVAVLVLAVLLGRFFSGNTKDLDGNTQFTAGKTSISDAVDGVIKIFTMAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYAGRKKLNPVDDSSKLHPEVLSLLNEGISQNSTGNVFVPKDGGETEVTGSPTEKAILSWAVKLGMNFDLIRSNTTILHVFPFNSEKKRGGVALKLVDSGVHIHWKGAAEIVLGACTQYLDSNGDLQSIEKEKAFFREAIDDMAARSLRCVAIAYRSYELDKVPSNEEELDQWSLPEEELVLLAIVGIKDPCRPGVKEAVRVCTDAGVKVRMVTGDNLQTAKAIALECGILASIEDAVEPNIIEGKSFRELPEKERELVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKRRSLEVLVRRVDQMKVSPISRGRGGLGKTVTKGLEINALTMEVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDQLMNRSPVGRREPLITNIMWRNLLVQAVYQIAILLVLKFSGESILPKQDTRAHDIQVKNTLIFNAFVMCQIFNEFNARKPEEMNVFRGVTKNKLFVGIVGVTFILQIIIIEFLGKFTSTIRLDWKLWLASLIMGIFSWPLAIAGKFIPVPKTPLSRFVLRPLRRLRRSRAAAAAAQQ 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0022 1139 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 505 711 IPR023299 GO:0000166
Lal18g0022 1139 PRINTS Sodium/potassium-transporting ATPase signature 242 262 - -
Lal18g0022 1139 PRINTS Sodium/potassium-transporting ATPase signature 492 513 - -
Lal18g0022 1139 PRINTS Sodium/potassium-transporting ATPase signature 618 636 - -
Lal18g0022 1139 CDD P-type_ATPase_Ca_PMCA-like 181 981 - -
Lal18g0022 1139 Coils Coil 641 661 - -
Lal18g0022 1139 SMART Cation_ATPase_N_a_2 158 229 IPR004014 -
Lal18g0022 1139 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 438 523 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal18g0022 1139 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 774 851 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal18g0022 1139 SFLD Haloacid Dehalogenase 481 851 - -
Lal18g0022 1139 MobiDBLite consensus disorder prediction 38 64 - -
Lal18g0022 1139 Gene3D - 551 698 IPR023299 GO:0000166
Lal18g0022 1139 Pfam haloacid dehalogenase-like hydrolase 496 820 - -
Lal18g0022 1139 Pfam Cation transporting ATPase, C-terminus 933 1108 IPR006068 -
Lal18g0022 1139 Gene3D - 161 353 - -
Lal18g0022 1139 Pfam Cation transporter/ATPase, N-terminus 157 224 IPR004014 -
Lal18g0022 1139 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 151 851 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lal18g0022 1139 PANTHER CATION TRANSPORTING ATPASE 891 1124 - -
Lal18g0022 1139 PANTHER CATION TRANSPORTING ATPASE 40 851 - -
Lal18g0022 1139 Gene3D - 699 851 IPR023214 -
Lal18g0022 1139 ProSitePatterns E1-E2 ATPases phosphorylation site. 501 507 IPR018303 -
Lal18g0022 1139 PANTHER CALCIUM-TRANSPORTING ATPASE 40 851 - -
Lal18g0022 1139 PANTHER CALCIUM-TRANSPORTING ATPASE 891 1124 - -
Lal18g0022 1139 SFLD p-type atpase 481 851 IPR044492 -
Lal18g0022 1139 SUPERFAMILY HAD-like 497 857 IPR036412 -
Lal18g0022 1139 MobiDBLite consensus disorder prediction 1 20 - -
Lal18g0022 1139 Pfam Ca2+-ATPase N terminal autoinhibitory domain 55 98 IPR024750 GO:0005516
Lal18g0022 1139 Gene3D - 354 521 - -
Lal18g0022 1139 SUPERFAMILY Calcium ATPase, transduction domain A 277 372 IPR008250 -
Lal18g0022 1139 Gene3D - 68 120 - -
Lal18g0022 1139 Gene3D - 886 1113 - -
Lal18g0022 1139 PRINTS P-type cation-transporting ATPase superfamily signature 323 337 - -
Lal18g0022 1139 PRINTS P-type cation-transporting ATPase superfamily signature 499 513 - -
Lal18g0022 1139 PRINTS P-type cation-transporting ATPase superfamily signature 699 710 - -
Lal18g0022 1139 PRINTS P-type cation-transporting ATPase superfamily signature 721 731 - -
Lal18g0022 1139 PRINTS P-type cation-transporting ATPase superfamily signature 806 825 - -
Lal18g0022 1139 PRINTS P-type cation-transporting ATPase superfamily signature 830 842 - -
Lal18g0022 1139 Pfam E1-E2 ATPase 276 477 - -
Lal18g0022 1139 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1111 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0022 Lal-Chr18 146622 161371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0022 42 1133 Primary Pumps ATPases AT3G21180 73.684 0.0 1618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0022 K01537 - gmx:100777143 1749.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0022 18 146622 161371 Lal18g0022 18 146622 161371 ECH