Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0001 ATGGTAGCGGATGGTGACCGTGTTCTTGTAGAAACGGGTAGTGGTGTGGTTCAAACGTTTTACTACGAGATTCAGCATCGTTTTGAGGTGTTACTTTGCAAGTTGTGGACTGAGATCTGTGTTCATTCTCTACCGGTTCTGCCAATGTTGGGTAATGGTAGTAATGTTGATTTGTATAAGCTGTTCATGGTGGTAAAAGGGAAAGGTGGATACGATGTTGTTTGTGAGAGTAAGCTGTGGGGTTCAGTTGCGGAGGAGTTGGATTTGAGTGTAGGTATATCGTTGAAGCTTGTTTATAGTAAGTATTTGAGTGCGTTGGATGCGTGGTTGAAGAAGGTTGCTGATAGTAAGGTGGCTGAGTGTGGGTTGGTTGATGATAGGGATAAATTTGGGAAGCGGTTGATGAAGCTGCAAGATGAGGTTAAAGGGCTGTTGTCGGGTAATGCCGAGAACGAGGGGGTGAACAATGGGAGGAAAGTTCGGAATCTAGGAAATCATGAGGCAGAAATGACGGACTGTATGATGAATGACTATGTTCTGGGAGACTTAGGTAATGATGGGATGAAAGGAACCAGAGAGGTTGTAAGGAAAGTGTCTGCGAAGCTGGGGGTGGGGGTCGATTTGTCTGATGCTGAGAATAGCATGGTGGGATTGGTGAGTGGAGGTGAGAAGTGTGATGGTGACTTGGTGTTGGATGCATCTAGTGGCAATGGAATCAGTTCTGGTTGTAAGAGAAAGAGAGAGTCTATGATGGGTTTGCTTGGTTGGATTACTAGAGTTGCTAAGAATCCTGGTGATCCTGTAGTTGGCTCATTACCTGATAAGTCGAAGTGGAAATCTTGTAGCAATCAGGAAGTCTGGAAGCAGGTTTTTTCCTTTCGGGACGCTGTATTTTTCAAAAGACGTTTTGATTCAAGCACTGAGCAACAAAATTGGAAGAATCAGAGGATGAACCCTTTCATGTATGATGATCATAGTGGGGGAAGTTACAATCTCAGAGAAAGGTTAAGATGTGACAAGAGGCATTTATTGGCAAAAGGTACAGCAGCTGCACGAAGTCCTTCAGATTCATCTAGAGGAAGCAGAGATTTGGGCAGAACACCAAGTCCTCATACTAGAGATCGATGTGAGAAACAGTTGGTTGTCTCAGGTATTGATGGATGTCCGGAAGTGTGCATACCTGTTGGGCCAAGTCACCAAGCTGAATTACCCGATTGGACAGGCATAAAACCTGAAAATGATTCCAAGTGGTCGGGTACCCAAATATGGCCATCTAAAAAAGGAAATTCTAGATTTATTATTGAAAGGGACCCCATAGGGAAGGGAAGACAAGATTCTTGTGGGTGCTCAGTTACAGGTTCTGCTGAGTGTGTAAGGTTCCACATTGCTGAAAAAAGGGCAAAAGTGAAGCTGGAATTGGGTGCAGCTTTTTACCTGTGGAAATTTGATAAGGTAGGTGAAGAAGTTAGGCTTTTGTGGACCAAGGAAGAAGAGAAGAGATTCAAGGATGTGGTGGGACCAAACCCTCTGCCAGAGGGATATTATTTTTGGGATCATATTTTTAGTTCCTTTCCTAAAAAGAGCAGAGCAGATTTAGTTAGCTACTACTTCAACGTCTTTCTTTTGCAGCGAAGAGCATACCAGAATAGGCATACTCCGGAGGACATTGACAGTGATGACGACGAAGCAGAGGATGGCCTGAGAAATGTTTTTGGACATCAGACACAGAAATCACGCTGTTCCATCTTAACCCCAAAAAAGGCAGCAAGAAAGAAAAAAAACAGCAAGTGA 1791 0.4383 MVADGDRVLVETGSGVVQTFYYEIQHRFEVLLCKLWTEICVHSLPVLPMLGNGSNVDLYKLFMVVKGKGGYDVVCESKLWGSVAEELDLSVGISLKLVYSKYLSALDAWLKKVADSKVAECGLVDDRDKFGKRLMKLQDEVKGLLSGNAENEGVNNGRKVRNLGNHEAEMTDCMMNDYVLGDLGNDGMKGTREVVRKVSAKLGVGVDLSDAENSMVGLVSGGEKCDGDLVLDASSGNGISSGCKRKRESMMGLLGWITRVAKNPGDPVVGSLPDKSKWKSCSNQEVWKQVFSFRDAVFFKRRFDSSTEQQNWKNQRMNPFMYDDHSGGSYNLRERLRCDKRHLLAKGTAAARSPSDSSRGSRDLGRTPSPHTRDRCEKQLVVSGIDGCPEVCIPVGPSHQAELPDWTGIKPENDSKWSGTQIWPSKKGNSRFIIERDPIGKGRQDSCGCSVTGSAECVRFHIAEKRAKVKLELGAAFYLWKFDKVGEEVRLLWTKEEEKRFKDVVGPNPLPEGYYFWDHIFSSFPKKSRADLVSYYFNVFLLQRRAYQNRHTPEDIDSDDDEAEDGLRNVFGHQTQKSRCSILTPKKAARKKKNSK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0001 596 CDD SANT 493 540 IPR001005 -
Lal18g0001 596 Gene3D - 17 119 IPR036431 GO:0003677
Lal18g0001 596 MobiDBLite consensus disorder prediction 351 365 - -
Lal18g0001 596 MobiDBLite consensus disorder prediction 551 596 - -
Lal18g0001 596 SMART ELM2_2 393 444 IPR000949 -
Lal18g0001 596 CDD ARID 25 107 - -
Lal18g0001 596 ProSiteProfiles ARID domain profile. 22 111 IPR001606 GO:0003677
Lal18g0001 596 MobiDBLite consensus disorder prediction 346 376 - -
Lal18g0001 596 SMART ARID_2 19 107 - -
Lal18g0001 596 SMART bright_3 23 112 IPR001606 GO:0003677
Lal18g0001 596 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 46 591 - -
Lal18g0001 596 SUPERFAMILY ARID-like 43 117 IPR036431 GO:0003677
Lal18g0001 596 Pfam ARID/BRIGHT DNA binding domain 45 105 IPR001606 GO:0003677
Lal18g0001 596 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 46 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0001 Lal-Chr18 13778 18248 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal18g0001 ARID 1.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0001 - - lang:109339911 835.869