Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1691 ATGAGAGGAAGGAGTTATAGTCTGTCTCCGAGTCCCCCACCATATACACATAGGGGAGGTGGAAGAATGGGTTACAGCAGTAGAAGAGGAAGTGGTAGAAGTCCAAGTCCACCACCATCACATAGAGAGAGAAGGGATAGATTCTACACCAGAGACAGAGACAGAGACAGAAACATTGATCTTCCAACCAGCCTTCTCGTTCGTAACCTCCGACATGACTGCAGGCCAGAGGATCTTCGAAGACCCTTTTCGCAATTCGGTCCTCTTAAAGACATTTACCTCCCTAAGGATTACTACACTGGAGAACCCCGTGGTTTTGGTTTTGTCCAGTTTGTGGATCCTGCTGATGCTGCCGATGCTAAACATCACATGGATGGCCAAGTTCTTCTTGGTCGCGAGTTGACTGTTGTCTTCGCTGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGACCAGAGAAAGAGGGGGTCGATTTAATGATCGAAGAAGGTCTCCCCGCTACTCTAGATCCCCTCCACTACGGCATAGATCTCGCTCCCGCACCCGTGACTATTATTCGCCTCCTCCTAAACAACGGGAATATTCGAGATCTGTGTCACCCGAGGAAAGAAGGTACAGTCGAGAAAGATCATATTCACCGCAGAAAAAAGAGAGGTCATACTCACGCTCTACGCCACCTCTCAATGGCAGTGTCTCAAGGAGCCGAAGCCAGAGTCCAGCAAAGTGCCCATCAAGCCGGAGCAGAAGTCCTACTCCAAACCGTGATGATAGGGAATCAGCCCATGGTGGTAGGTCTCCCAGTCCATGA 807 0.4969 MRGRSYSLSPSPPPYTHRGGGRMGYSSRRGSGRSPSPPPSHRERRDRFYTRDRDRDRNIDLPTSLLVRNLRHDCRPEDLRRPFSQFGPLKDIYLPKDYYTGEPRGFGFVQFVDPADAADAKHHMDGQVLLGRELTVVFAEENRKKPTEMRTRERGGRFNDRRRSPRYSRSPPLRHRSRSRTRDYYSPPPKQREYSRSVSPEERRYSRERSYSPQKKERSYSRSTPPLNGSVSRSRSQSPAKCPSSRSRSPTPNRDDRESAHGGRSPSP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1691 268 MobiDBLite consensus disorder prediction 177 216 - -
Lal17g1691 268 MobiDBLite consensus disorder prediction 38 55 - -
Lal17g1691 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Lal17g1691 268 MobiDBLite consensus disorder prediction 1 55 - -
Lal17g1691 268 Gene3D - 50 171 IPR012677 -
Lal17g1691 268 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL33 53 251 - -
Lal17g1691 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Lal17g1691 268 MobiDBLite consensus disorder prediction 217 249 - -
Lal17g1691 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 53 251 - -
Lal17g1691 268 SUPERFAMILY RNA-binding domain, RBD 62 167 IPR035979 GO:0003676
Lal17g1691 268 SMART rrm1_1 64 137 IPR000504 GO:0003723
Lal17g1691 268 MobiDBLite consensus disorder prediction 141 268 - -
Lal17g1691 268 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1691 Lal-Chr17 18068061 18070450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1691 30 126 Eukaryotic Initiation Factors Gene Family AT3G11400 39.175 4.36e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1691 K12900 - gmx:100775883 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1381 21 17165574 17168686 Lal17g1691 17 18068061 18070450 LSH