Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1687 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGATAATGCTAACAATTCAGTTCCTCCTTCAAAACCGGCTTATGTGCCTCCACATCTTAGGAACCGGCCACCCCTATCAGCTGAATCCCATGCTCCTCCTCCTCCTGCCTATAGTGGTCCCTCTTCGGCTTCCGCTTCCGTTGCTGGTGCTGTTTCTGGTAGATGGTCCTCTCCTAGGAATGAGTACCGTACCCAGCCTGTTAGCAGTGGTCACACAAGCGGATGGGGTAACAACAGTGGCGGATGGGATCGTGGGAGGGACCGTGAAGTCAACCCCTTTGCAGAACAGGATGATTCTGAACCGACATTCACTGAGCAGGAGAATACTGGAATAAATTTTGATGCATATGAAGACATTCCTGTTGAGACCACTGGTGAAAATGTTCCTTCACCTGTGAACACATTTGCAGAAATTGACTTGGGTGAAGCACTCAACGAGAATATAAGAAGGTGCAAATATGTGAGGCCAACACCTGTTCAACGCAATGCCATACCAATATCACTTGCTGGACGAGATTTAATGGCTTGTGCACAGACTGGTTCTGGAAAGACGGCTGCATTTTGTTTCCCAATTATCAGTGGAATTATGCGGGGACAGCCAGTGCAGAGGCAACCTCGTGGGGTGCGTACTGTGTTCCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTCTCAATGCAAATACATGAAGAAGCTAGGAAGTTTTCATACCAAACCGGTGTTAGGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCAGCAGCTACGAGATCTTGAGAGAGGGGTGGACATTCTTGTAGCAACTCCAGGCAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTACAAATGATCAGATATCTGGCCTTAGATGAGGCAGACAGGATGTTGGATATGGGTTTTGAGCCTCAGATAAGGAAAATTGTGCAACAGATGGACATGCCCCCACCGGGTGTCAGACAGACTATGCTCTTTAGTGCCACGTTTCCTAGAGAGATACAGAGACTAGCATCTGATTTCCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGCTCGAGTACTGATTTAATTGACCAAAGAGTTGAGTATGTTCAGGAATCTGACAAGAGAAGTCATCTCATGGACCTTCTTCATGCCCAGAGGGCAAATGGTGTCCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCACTGGAGCACTGGTTGTGTCTTAATGGTTTTCCAGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTCGCATTGAAGTCATTTAAAAGTGGCAACACCCCTATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCTCATGTTGTTAATTTTGACCTTCCCAATGATATTGATGATTATGTGCACCGTATTGGAAGGACAGGGCGAGCAGGAAAGAAGGGCCTCGCCACTGCATTTTTTAATGACAATAATGTAAACTTAGCTAGGGCTTTGGCAGATCTGATGCAAGAAGCAAACCAAGAAGTACCTGCTTGGATTTTGGGATATGCTGCTCGGTCTTCCTTCTGCGGGGGAAGGAACCGTCGATCAGGAGGAGGAAGCCGTTTTGGTAGCCGTGACTTCCGAAGAGAAGGTTCTTTCAGTAGGGGTGGTAGTTCTGATTATCATAATGCAGGAAACAATGGTGGTGGATATGGGTCATGTGGTGGGTACGCCGGAGGATATGGCAGTTCTGGGGTAACTAGTGCATGGGACTGA 1830 0.471 MRTSWADLAANSAADNANNSVPPSKPAYVPPHLRNRPPLSAESHAPPPPAYSGPSSASASVAGAVSGRWSSPRNEYRTQPVSSGHTSGWGNNSGGWDRGRDREVNPFAEQDDSEPTFTEQENTGINFDAYEDIPVETTGENVPSPVNTFAEIDLGEALNENIRRCKYVRPTPVQRNAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRQPRGVRTVFPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNGFPATTIHGDRTQQEREFALKSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNVNLARALADLMQEANQEVPAWILGYAARSSFCGGRNRRSGGGSRFGSRDFRREGSFSRGGSSDYHNAGNNGGGYGSCGGYAGGYGSSGVTSAWD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1687 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 579 - -
Lal17g1687 609 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 47 579 - -
Lal17g1687 609 SMART helicmild6 421 502 IPR001650 -
Lal17g1687 609 SMART ultradead3 166 378 IPR014001 -
Lal17g1687 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 521 IPR027417 -
Lal17g1687 609 Pfam Helicase conserved C-terminal domain 387 502 IPR001650 -
Lal17g1687 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 374 541 IPR001650 -
Lal17g1687 609 CDD SF2_C_DEAD 375 511 - -
Lal17g1687 609 MobiDBLite consensus disorder prediction 1 23 - -
Lal17g1687 609 MobiDBLite consensus disorder prediction 1 120 - -
Lal17g1687 609 MobiDBLite consensus disorder prediction 557 573 - -
Lal17g1687 609 MobiDBLite consensus disorder prediction 551 578 - -
Lal17g1687 609 Gene3D - 102 365 IPR027417 -
Lal17g1687 609 Gene3D - 366 544 IPR027417 -
Lal17g1687 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 363 IPR014001 -
Lal17g1687 609 MobiDBLite consensus disorder prediction 54 93 - -
Lal17g1687 609 CDD DEADc_DDX3_DDX4 148 369 IPR044763 GO:0003724|GO:0005524
Lal17g1687 609 Pfam DEAD/DEAH box helicase 171 352 IPR011545 GO:0003676|GO:0005524
Lal17g1687 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1687 Lal-Chr17 18041147 18045829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1687 145 534 Eukaryotic Initiation Factors Gene Family AT3G19760 31.969 1.85e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1687 K11594 - gmx:100795756 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1663 4 20671481 20677535 Lal17g1687 17 18041147 18045829 LSH