Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1674 ATGGTTTCCATCCTCAAATTTCGTAGCATCTTCTCTACACGCCCATACGGTGCCGTAAGATATTGTCATTTTGGATCCGAACGTCTGAAATTGCCACCAAGGGTGGGGCTTTTTTGGGACTTAGACAACAAACCACCCAACTCAATTCCACCTTATGAAGTAGCCAATAAACTGAGAGTAGCCGCTTCCTCCTTTGGGGTTGTCAGACACATGATCGCTTATGCAAATAGCCACACTTGTAGCCATGTCCCACTCCCTGTCCGGGAAAGGAAGAAGGAGAGGGAACTCTTGAATCAATTAGAGAACAAGGGTGTTATCAAGCGGAATGAACCTTATCTTTGTCGGGTTTGTGGGAGAAAATTTCATACCAATGATAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGCGAGCATGCGAAAAGAGTGAATCAAATAGAGTCGGCGAAAGGGAGCAGGAGGGTGAAGCTGGTGGGTAAGTATTCGATGAAAATGGAAAAGTATAAGAAGGCTGCAAGGACTGTTTTGACTCCAAAAGTGGGGTATGGTTTGGCGGATGAGCTGAAACGGGCAGGGTTTTGGGTTCAGACTGTGTTAGATAAGCCACAAGCTTCAGATCGTGCATTGAAAAGTCAGATGGTGGATATGATGGATCATAGGCGGATTGAGTGTCTGGTGCTCGTATCAGATGATTCTGATTTTATCAATGTGATAAAGGAAGCAAAACTACGATGTCTGAAGACGGTTGTCATTGGGGATACTCCTGATGGAGAGTTGAAGAGGACTGCAGATGCTGCCTTCTCTTGGGTGGAGATTCTGATGGGGAAGGCTAAAAAGGAGGCTGTTTCAGTTGTGGAAAATTGGAAGGATCGTGATATTTTAAAGAGGTTAGAATGGACATACAATCCAGATAATATGGTTACTGAAGACGAGAATATTGAAGATATTTGTGATCAAGTTGACGATGCCTATAAGGATGATGGAGGTGCTTGGTGGGAACTAGATTCTGACCATGTTGACATAAATAATCAGCCACACAAAGCATCCAGTTTATCTGTGACTAGATGA 1068 0.4382 MVSILKFRSIFSTRPYGAVRYCHFGSERLKLPPRVGLFWDLDNKPPNSIPPYEVANKLRVAASSFGVVRHMIAYANSHTCSHVPLPVRERKKERELLNQLENKGVIKRNEPYLCRVCGRKFHTNDKLVNHFKQLHEREHAKRVNQIESAKGSRRVKLVGKYSMKMEKYKKAARTVLTPKVGYGLADELKRAGFWVQTVLDKPQASDRALKSQMVDMMDHRRIECLVLVSDDSDFINVIKEAKLRCLKTVVIGDTPDGELKRTADAAFSWVEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPDNMVTEDENIEDICDQVDDAYKDDGGAWWELDSDHVDINNQPHKASSLSVTR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1674 355 Gene3D Classic Zinc Finger 112 161 - -
Lal17g1674 355 Gene3D - 28 272 - -
Lal17g1674 355 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 33 340 - -
Lal17g1674 355 Pfam NYN domain 184 267 IPR021139 GO:0004540
Lal17g1674 355 ProSitePatterns Zinc finger C2H2 type domain signature. 114 135 IPR013087 -
Lal17g1674 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 140 IPR013087 -
Lal17g1674 355 CDD PIN_LabA-like 123 253 - -
Lal17g1674 355 PANTHER - 33 340 - -
Lal17g1674 355 SUPERFAMILY beta-beta-alpha zinc fingers 108 138 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1674 Lal-Chr17 17925126 17926193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1674 7 337 C2H2 Transcription Factor Family AT4G12240 57.225 1.17e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal17g1674 NYN 5e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1674 - - lang:109328008 666.381