Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1670 ATGGAGTGGAATTCAAAATCACTGGGGCAATGGGAGTGGGAGGAGAACTTATTCTTTTTCAATGGAAAAGCTTCAGAAAATCCTAAGTTACAATCAACCACAAATTGGAGTTCTGAAGCAGATAAAGAAATCAATGTTGAACTATTGTATCCATCAGAGGTTAGTGTTTTTTGTGAGTCTGAACTAATACATGCTTCTTCATCAAGGAGCTCAAAATCAGTTTCCATCAATTCATCATGGAACGAGGACAGCAAAATATCAATGTTCACTTTGGAAGGTTCTGAACATGATGATTCAACCGGTAAGAAAGAAGAGCAAGTGGAAACTTCAGCAGCACAAGAACCCTCTTCAGTCTCTGGTGAACCACCATTTCTGACTCTAAAGCTTGGTAAAAGGTTGTACTTTGAGGATGTTTCTACAGGAAGTGATTCCAAGAAATGTAAATCCAATGGTCAGAAGTTGCAACATCCAAGCTGCCAGGTTGAAGGTTGTGGCCTTGATCTGTCATATGCGAAGGCTTACCATCGAAACCATAGAGTTTGCGAAAATCATTCAAAATCCCCTAAGGAGCTAATATTTGGGTCAGAATGCCGATTTTGCCAGCAGTGTAGCAGGTTCCATGGTCTGTTGGAATTTGATGATAAAAAGAGAAGCTGTAGACGACGTCTTTCAGATCATAATGCTAGGCGCCGCAAACCACATCCTCATACATTGTCTTCATCGCCCTATGATGGGAGGAAACTAATGAGCCCATTTGCATATTCAAGGAATGCTACGAATTTAGCATGCCAAGACATACACAGCAGCAAGTTCCCCCACACAAAAGATTTTCTCATGAAGCCTGAAAAAGCGTTCAATAAGATACCAAGTACTATCAACATGATTTCTGATAATTCCAGTGGCCTTCTTACATCCAAAGGCATAGCAATCAAGAGTACTATTACAGGTATAGAAGATCCTATAACGTCTTCTGATCTGAATGCTACACAAGTTGTTAACCGTGCTCTCTCTCTTCTGTCAAACAACTCATCATGGGGTGCTGCATATGAGTCCGAGTCCTTCTCCATAGAGTGCTCCAATAGGACAACCAATACCAATCATCAGCCTATAACAACACATGCAGCAATGTCTCATCATCTCTTACCTTTTGCTTCATCAGAGTATTGGAACACTAATCAGCAACCAGCAAATTCCAGCATCTGTATCCCCTCATACTCAGATTCTGATAATAGCACTCACTTTCAAGGGTTTCAGCTGTGGTACACACCCTATGAATCTGGTTTTCCTTGCAACCAGCTGGATTAA 1305 0.4107 MEWNSKSLGQWEWEENLFFFNGKASENPKLQSTTNWSSEADKEINVELLYPSEVSVFCESELIHASSSRSSKSVSINSSWNEDSKISMFTLEGSEHDDSTGKKEEQVETSAAQEPSSVSGEPPFLTLKLGKRLYFEDVSTGSDSKKCKSNGQKLQHPSCQVEGCGLDLSYAKAYHRNHRVCENHSKSPKELIFGSECRFCQQCSRFHGLLEFDDKKRSCRRRLSDHNARRRKPHPHTLSSSPYDGRKLMSPFAYSRNATNLACQDIHSSKFPHTKDFLMKPEKAFNKIPSTINMISDNSSGLLTSKGIAIKSTITGIEDPITSSDLNATQVVNRALSLLSNNSSWGAAYESESFSIECSNRTTNTNHQPITTHAAMSHHLLPFASSEYWNTNQQPANSSICIPSYSDSDNSTHFQGFQLWYTPYESGFPCNQLD 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1670 434 Gene3D - 149 220 IPR036893 GO:0003677|GO:0005634
Lal17g1670 434 SUPERFAMILY SBT domain 157 238 IPR036893 GO:0003677|GO:0005634
Lal17g1670 434 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Lal17g1670 434 MobiDBLite consensus disorder prediction 223 244 - -
Lal17g1670 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 433 IPR044817 GO:0003677
Lal17g1670 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 22 433 - -
Lal17g1670 434 Pfam SBP domain 159 232 IPR004333 GO:0003677
Lal17g1670 434 MobiDBLite consensus disorder prediction 93 121 - -
Lal17g1670 434 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1670 Lal-Chr17 17895162 17903360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1670 1 375 SBP-box Gene Family AT5G43270 37.717 3.56e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal17g1670 SBP 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1670 - - lang:109328770 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1651 4 20576337 20581888 Lal17g1670 17 17895162 17903360 LSH