Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1663 ATGGTCAAGTACTCCAGAGAACCAGATAATCCCACAAAGTCTTGCAAGGCTAGAGGTGCTGACCTCAGAGTCCATTTCAAGAATACTAGGGAGACTGCCTTTTCCATTAGAAAGTTGTCCCTGGTTAAGGCTAAGAGGTACTTGGAGGACGTTTTGGCCCACAAACAGGCCATTCCATTCAGGCGCTTCTGTCGTGGTGTTGGGCGAACTGCTCAAGCAAAGAACAGGCACTCTAACGGACAAGGACGCTGGCCTGTCAAATCCGCTAAGTTCATCTTAGATTTGCTTAAGAATGCTGAGAGTAATGCCGAAGTGAAGGGTTTGGATGTGGATGCTCTTTACATTTCTCACATCCAGGTTAATCAAGCACAGAGGCAAAGACGGCGCACATACCGTGCTCACGGAAGAATCAACCCCTACATGTCATCTCCTTGCCACATCGAGCTGATATTGTCTGAGAAGGAAGAGCCCGTAAAGAAAGAGCCTGAGACCCAGTTGGCCACAAAGAAGAAGTCACAAGCTCTTAGAAGTGGAGCTTCATCTTAA 546 0.4762 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFSIRKLSLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQRQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATKKKSQALRSGASS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1663 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lal17g1663 181 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Lal17g1663 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lal17g1663 181 MobiDBLite consensus disorder prediction 156 181 - -
Lal17g1663 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lal17g1663 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lal17g1663 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lal17g1663 181 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lal17g1663 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lal17g1663 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1663 Lal-Chr17 17861172 17863645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1663 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.293 7.98e-117 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1663 K02880 - gmx:100499784 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1344 21 16833347 16835861 Lal17g1663 17 17861172 17863645 LSH
Lal17g1663 17 17861172 17863645 Lal7g0616 7 13176571 13178865 PCT
Lal7g0616 7 13176571 13178865 Lal17g1663 17 17861172 17863645 PCT