Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1662 ATGATGGATGTGGATGAGCTAGAAGAAAATCTGTTTGCAGCAAGTGATGCTAAGTTACATGGAAGAATGTGCGAGCAACTATCTGTGATATATTGCAAAATATTGTCAATGTTTCCGTCTTTAGAAGAAGCTAGGCCTAGGAGCAAATCTGGAATCCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGTCAAAGAGTGTTCTTCGGCACTGTTCAGACTGCAGCAAACTTTACCTGGCTATAACTGGGAGTTCTGTTCTTCTAAAATTTGAGAAGGCTAAGTGTGCTCTTGAAGGTAGTCTTAAACTGGTGGAAGATATCGTTCCACAATCTATTGGATGTCAGATTGACGAAATTGTGAAGGAACTTGCAAGTATGGTATTTGCACTTGACCCATCTGAGAAGCAAATCGGAGATGATTTAATTGCATTGCTTCAGCAGGGGATACAGTTTAATGATTCTAGTGACAGTGGTGAACTAGAATGTTTTCATCAGGCTGCTACTAGTCTTGGAATTATATCTTTAAGATCCGCTTTCACTGAAAGGAGAGACCTAAAAAAACTCATAGAACGGGCTCGGTCTGAGGAAGACAAACGAAAAGAATCAATTATTGCATATCTTTTACACCTTATGAGAAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAGTGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATATCAAGAGGACAGTGTTCCTGGTGGTAACTGTCAGGCCTTTAACAGACAGCTTTCTAAACTTAGTTCGTATAATTTGAAGGCAACTAGTAGGAAATCCGTGCAGATGAACCTTCCACCTGATGAGTTAAGATGTCCAATATCTCTTCAACTTATGAGTGACCCCGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAAATGGTTTAGGGCTGGACACAACACCTGCCCAAAGACCCAACAAGAACTTTCACATCTTTCATTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTCAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTCAATCTCTTGATGTTAACTACTGGGGGTTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTGAACAGTGTCAGCTCTTGCAAGCTGAATGGTGTTGAAGTAGTTCCTGTAGAAGAGAGTGCTATATCAGAGAAAACTGAGATGAATGCAACTGAAAGCTTGTCTACAGAAGAGGAAGATGCCAAGCAGTATTTAAGTTATCTTAAAGTCTTGACTGATGGGAGCGACTGGAAGAAGAAGTGTGTAGTGGTAGAACGGTTAAGGCAATTGCTGCGGGATGATGAGGAAGCTAGGATTTTTATGGGGGATAATGGGTTTGTCGAAGCACTTTTGAAGTTTCTACAACCAGCTATACATGAAGGGCTTTTGATGGCTCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTTGCTGTGAATAACGACAGAAATAAGGAAACTATGATATCAGCAGGGGTCTTAACGTTGTTGGAGGAAATGATCTCAAACAGTAGTTCTTATGGTTGTGCAACAGCGCTCTATCTGAATCTTTCTTGCCTTGAAGACACTAAGCCTATGATTGGATCGAGTCAGGCTGTCCAGTTCCTAATTCAGATTCTTCAAGCCAACACTGATGTGCAATGCAAGCTAGACTCTCTCCATGCACTCTATAATCTCTCTACTGTGCCCTCCAATATCCCAAACCTCCTTTCATCCGGCATCATTAATACCCTACAATCCGTTCTTGTAGGCCAGGGTGGTTCATTGTGGACCGAAAAATGCATAGCTGTTTTGATAAATTTGGCTGCTTCTCAAGTTGGAAGAGAGGAAATAATGTCGGCTCCCGGTCTCATAAGCGCACTGGCTTCAATACTGGATACTGGTGAGCTCCAAGAGCAGGAGCAAGCTGTAACCTGTCTCCTAATTTTGTGTAACAAGAGTGACAAATTTATTGAAATGGTCTTGCAAGAAGGGGTCATACCTGCATTGGTGTCAATATCAGTGAATGGCACCTCAAGAGGAAGAGAAAAATCTCAGAAACTTTTGATACTCTTCCGAGAGCAGCGACACCGAGACCATTCGCCAGCAGAGACACTTCAACACCCACCTGAGGCTAGTAATTTGTCTATGGCTCCACCTGAAGTGAAACCACTATGCAAGTCAGCATCTAGAAGAAAGGTGGGGAAGGCTTTTAGCTTTCTCTATAAAAGCAAGAGCTATTCTGTTTACCAGTGTTGA 2298 0.4186 MMDVDELEENLFAASDAKLHGRMCEQLSVIYCKILSMFPSLEEARPRSKSGIQALCSLHVALEKSKSVLRHCSDCSKLYLAITGSSVLLKFEKAKCALEGSLKLVEDIVPQSIGCQIDEIVKELASMVFALDPSEKQIGDDLIALLQQGIQFNDSSDSGELECFHQAATSLGIISLRSAFTERRDLKKLIERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDSDSQGSQPCSPTVQRYQEDSVPGGNCQAFNRQLSKLSSYNLKATSRKSVQMNLPPDELRCPISLQLMSDPVIIASGQTYERVCIEKWFRAGHNTCPKTQQELSHLSLTPNYCVKGLVASWCQQNGVPIPEGPPQSLDVNYWGLALSDSESTNSRSVNSVSSCKLNGVEVVPVEESAISEKTEMNATESLSTEEEDAKQYLSYLKVLTDGSDWKKKCVVVERLRQLLRDDEEARIFMGDNGFVEALLKFLQPAIHEGLLMAQESGAMALFNLAVNNDRNKETMISAGVLTLLEEMISNSSSYGCATALYLNLSCLEDTKPMIGSSQAVQFLIQILQANTDVQCKLDSLHALYNLSTVPSNIPNLLSSGIINTLQSVLVGQGGSLWTEKCIAVLINLAASQVGREEIMSAPGLISALASILDTGELQEQEQAVTCLLILCNKSDKFIEMVLQEGVIPALVSISVNGTSRGREKSQKLLILFREQRHRDHSPAETLQHPPEASNLSMAPPEVKPLCKSASRRKVGKAFSFLYKSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1662 765 PANTHER U BOX DOMAIN-CONTAINING 2 757 - -
Lal17g1662 765 MobiDBLite consensus disorder prediction 225 246 - -
Lal17g1662 765 SUPERFAMILY RING/U-box 279 355 - -
Lal17g1662 765 Gene3D - 409 712 IPR011989 -
Lal17g1662 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Lal17g1662 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Lal17g1662 765 MobiDBLite consensus disorder prediction 224 246 - -
Lal17g1662 765 MobiDBLite consensus disorder prediction 712 732 - -
Lal17g1662 765 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 757 - -
Lal17g1662 765 SUPERFAMILY ARM repeat 429 696 IPR016024 -
Lal17g1662 765 CDD RING-Ubox_PUB 284 326 IPR045210 -
Lal17g1662 765 Coils Coil 176 196 - -
Lal17g1662 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Lal17g1662 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1662 Lal-Chr17 17855459 17862227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1662 2 764 U-box Gene Family AT1G24330 64.524 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1662 - - gmx:100804344 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1343 21 16814733 16824771 Lal17g1662 17 17855459 17862227 LSH
Lal17g1662 17 17855459 17862227 Lal7g0609 7 13108253 13113726 PCT
Lal7g0609 7 13108253 13113726 Lal17g1662 17 17855459 17862227 PCT