Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1651 CCTCTATTTCTTCACTCCATAGGCATACAAGAAGTTATGGCATTTTCATTTCCTCTTATGTTACAATTCTTGCTTCTTGCCACAACTCTTACCTCTCCCTCTTCTGTTCAAGATCCTGATCAATTTGTTGTCCTAGAAGTAGAAAAGAGGAGCAACGAGTCAAGGAGAAATTTGGCATTTCATGCATGTGGAACAGGCAACCCTATTGATGATTGTTGGAGATGTGACCCAAATTGGGAAAGGAACCGCAAACATCTAGCAGATTGTGCTATTGGTTTTGGCAAACATACCATAGGTGGCAAAAATGGTAAAATATATGTTGTCACTGACCATAGTGATAACTCTGAGAACCCAAAATTAGGCACACTAAGATATGGTGTTATCCAAGAAGACCCTTTATGGATCATATTCAAGTATAGCATGGTGATCAAGCTAGAAATGGATCTTGTAATGAATTCTCATAAAACAATTGATGGTAGAGGACAAAATGTGCACATTGCAGGAGGACCTTGTATTAAAATTCAATACAAAACTAATATTATAATACATGGTATTCACATACATGATTGTAAACGTGGTAGTAGTGGCTATGTAAGGGATTCACCTAATCATGTTAGCATGAGAGGTAAATCAGATGGTGATGGTGTAACAATATTTGGTGGGACCCATGTTTGGGTGGATCATTGTTCTTTATCAAATTGTTTTGATGGACTAATTGATGTTGTTCATGGGTCAACAGCTGTTACAATTTCTAACAATTATATGACACACCATAACAAAGTCATGCTTTTGGGACATAGTGATTCCTTTGAAGAGGATAAGAATATGCATGTCACCATAGCTTTCAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCTAGATGCAGGCATGGATACTTCCATGTGGTAAACAATGACTACACTCATTGGCAAAAGTATGCAATAGGTGGGAGTTCATCACCAACTATTTACAGCCAAGGCAATAGATTTCTTGCTCCAGATGATGAAAACCATAAAGAGGTGACCAGACATTTTCATTCATCAGAAAGTGGGTGGAAGAAATGGAATTGGAGATCTGAAGGGGACTTAATGTTGAATGGTGCCTTCTTTACAAAGTCAGGAGCAGGAACAAGAACAAGAGCATCTCTTATGTATGCTAAGGCATCAAGCATGGTGGCACGACCAACTAAGCTTGTAACTACCATGACAGCAGGGGCTGGAGCTCTTGATTGCAGAAAAGGCTATATCTGCTAG 1257 0.3914 PLFLHSIGIQEVMAFSFPLMLQFLLLATTLTSPSSVQDPDQFVVLEVEKRSNESRRNLAFHACGTGNPIDDCWRCDPNWERNRKHLADCAIGFGKHTIGGKNGKIYVVTDHSDNSENPKLGTLRYGVIQEDPLWIIFKYSMVIKLEMDLVMNSHKTIDGRGQNVHIAGGPCIKIQYKTNIIIHGIHIHDCKRGSSGYVRDSPNHVSMRGKSDGDGVTIFGGTHVWVDHCSLSNCFDGLIDVVHGSTAVTISNNYMTHHNKVMLLGHSDSFEEDKNMHVTIAFNHFGEGLGGRMPRCRHGYFHVVNNDYTHWQKYAIGGSSSPTIYSQGNRFLAPDDENHKEVTRHFHSSESGWKKWNWRSEGDLMLNGAFFTKSGAGTRTRASLMYAKASSMVARPTKLVTTMTAGAGALDCRKGYIC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1651 418 SMART amb_all 140 337 IPR002022 -
Lal17g1651 418 SUPERFAMILY Pectin lyase-like 37 412 IPR011050 -
Lal17g1651 418 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Lal17g1651 418 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Lal17g1651 418 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Lal17g1651 418 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Lal17g1651 418 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Lal17g1651 418 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Lal17g1651 418 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Lal17g1651 418 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Lal17g1651 418 PANTHER PECTATE LYASE 18-RELATED 15 414 IPR045032 GO:0030570
Lal17g1651 418 Pfam Pectate lyase 149 331 IPR002022 -
Lal17g1651 418 PANTHER PECTATE LYASE 15 414 - -
Lal17g1651 418 Gene3D - 66 411 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1651 Lal-Chr17 17790375 17793827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1651 15 418 Polysaccharide Lyase AT5G63180 66.585 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1651 K01728 - gmx:100801136 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1634 4 20468327 20470485 Lal17g1651 17 17790375 17793827 LSH