Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1640 ATGAAGAAATTTAACTCACACAACGCCACCACTACTACCACGCGCCACCACCACTATTCCCAACTTCAACCACCACCACCTTCACCTCACGGTGGTCACAACTCCCGTCCTTCTCGCCATTCCTTTTACCATTGGAAGCCCGGTGTCCACTCTCCCGCCAACAATTCCACCGTTCGCCGCCCTAATTTCGTCATCACCCTACTCCCCGGCCGCCGTTCATTCCTCCGGGACGACGTTGCGGCGATAATCTCTGAATGCAACTCCAAGCCGGATAATACCTCTTTCTCCGGCAGTGATCGCGTCACCGCCGTGCTTGGTTTTCGGCAGTGGTGCGACGCGCTCGACGCCGTGGGCTGGTTCTGGCAGAGTCGGCTGAAAGAAATGCACGATTTGACGCCGGAACTGACGTCATACGTTGTTGTACATTCCGACATGCACGAACTCGAACGGCGATTGAAAAACCTATTTTCGTACCACGTGAAGTGTTTGATGGAAGGGAAAGAAGTGAAACGATTGAACGTTGAAATAGAACGGTTATCGAAGGAGATTGAGAGTGTTTCGAAGATGCTGAGTAAGCCGTTGCCGATTCCGGTTTATAATCAGAGAAAGGAGAAGAAGAAAGGGTTTGAAACTGAGAAAAAACTGATTGAGAAGAGAGTAAGGGAATTTAAGAATGCAATGGAGTGTTTAGTGAAGAAATTTGAGGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAGGAGAATAATGAGGAAAGTGTTGCTTCTGTGTTTAAGTTTGAAGGAAGATTAGATTGGATGAAGGTTCATTGCATGATCATGAGAGAAAGGCGCAGACTTGAAGAAGGGTTGCCCATTTATGCTTATAGGACTGATATTATTCAGAAAGTTCATTCTCAGCAGGTAACTGTGTTAATTGGAGAGACTGGTTCCGGAAAGAGTACACAGCTGGTACAGTTTCTAGCTGATTCAGGTATTGGTGCTAATGAGTCCATTGTATGCACCCAACCTCGTAAAATTGCTGCCAAATCAGTGTCTCAAAGGGTCCAGGAAGAAAGCAGTGGATGTTATGGAGACAATTCAATCGTGTGTTATTCTACATTTTCATCCTCACACCGGTTTAATTCCAGAATTACATTCATGACAGACAACTGTTTATTGCAGCACTACATGAGTGACAAGAATCTTCTTGGGGTCTCATGCATCATAATTGATGAAGCTCATGAAAGGAGCTTAAATACTGATTTACTGTTGGCATTGATCAAGAATTTACTCTCTTGGAGGGTTGACATGCGGCTTGTCATTATGTCTGCTACAGCCGATGCAAAGCAGCTATCTGATTATTTCTATGGATGTGGAATTCTTCATGTGCTTGGGAGAAACTTTCCGGTGGATGTGAGATATGTTCCTTCTGACAACACGGGACATGCTGGTTCTGCTGTTATTGCATCATATGTTTCTGATACTGTGAGAGTAGCAACTGAAATTCATAAAACAGAGAAAGAGGGATCTATTCTTGCCTTTCTGACCTCCCAGCTAGAAGTAGAGTGGGCTTGTGAAAATTTTAGAGATCCCTTAGCAGTTTCTTTGCCCTTACATGGAAAACTTTCATCTGAAGAGCAATTTCATGTTTTCCAGAATTACCCTGGAAAAAGAAAAGTGATATTTGCAACAAATCTTGCAGAGACATCACTTACAATTCCTGGTGTGAAGTATGTGATAGATTCTGGTTTTGTTAAAGACTGTCGATTTGACCCTAGCACTGGGATGAATGTACTTAAGGTTTGCCAGATCAGCCAGAGTTCTGCTCTTCAACGAGCTGGCCGTGCTGGGAGAACTGAGCCTGGTTGGTGCTATAGACTGTACTCGGAAGCTGATTATCAGTCCATGGAACCAACTCAAGAACCGGAGATTCGGCGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAATGTGCAGGAATTTGATTTTGTGGATGCTCCAAGTTCTAGTTCTATTGAGATGGCGATCAAGAATCTAATTCAACTAGGAGTCATTAGACTGAACAAAAATGTTCATGAATTAACACATGAAGGCAGATACTTGGTAAGAATGGGGGTCGAACCTAGGCTTGGTAAACTCATTCTTGGCTGTTCCCGTCATGGTTTGGGTAGAGAAGGCGTTGTCCTTGCTGCTTTGATGGCCAATGCCAGCACCATATTTTGCAGAGTTGGTAATGAAGACGATAAGAATAGATCCGACTGTCTTAAAGTTCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTACTCTCAGTGTACAAGGAATGGGAAGCGTTGCCTCGAGAAGGGAGGAACAAATGGTGCTGGGAAAACAGCATCAATGGCAAATCAATGAGGAGATGCCAAGACACCATCATGGAGCTAGAATCTTGTCTTGAGCGTGAACTTTGCCTTGTTACTCCAAGTTACTGGCACTGGAACCCTTCTAAGCCCTCTGATTATGATAAGTATCTGAAAATGGTTATACTTTCTTCACATGCTGAAAATGTAGCCATGTACTCTGGTTGCGATCAACTCGGTTATGAAGTGGCACAAACTGGGCAACTTGTTCAATTACACCCATCTTGTTCATTGCGCGTATTTGCTCACAAACCTAGTTGGGTGGTTTTTGGTGAACTTCTTTCAGTTTCTAATAATTATCTGGTCTGTGTAACTGCTTTTGACTTTGATTCACTGTACAACCTCTCCCCTCCTCCCCCATTTGATGTATCCAAGGTGGAAAAGCGGAAGTTACAGATGAGGAGGCTGACTGGTTTAGGATCTATTCTTCTCAAGAAATTTCGTGGGAAAGGCAACAGTAGTATGCTTGGTCTGACATCTCGGATACGAAAAGCTTGTATGGATGAGCGTATCTTCATTGAAGTCAATGCTGGCAAGAATGACATTCAGTTATATGCCACTTCGCATGATATGGAAACTGCCCTTGGGTTTGTTAATGATGTTTTAGAATATGAGAAAAAGTGGCTTCATACTGAATGTGTGGAAAAATGTTTATATCATGGTGTCTCACCTTCTGTAGCTTTGTTTGGGTCTGGGGCTGAGATAAAGCATTTGGAACTTGAGAAGCGTTTCTTGAGTATTGATGTGTGTCACCCAAACATCAATGCAATTGATGACAAGGAGCTCTTGATGTTTTTTGACAAGAACACCTCCGGTGGTATCTGTGCTGTACAAAAGTTCACAGGCACGGTGAAGGATGTTGAAGAGAGTGAAAAGTGGGGCAAGATAACATTTATCTCCCCTGATGCTGCCGAAATAGCTGCTGATCTAGATGGAGAGGAGTTTTGTGGCTCACCCTTGAAAGTTGTTCCTTCACAAACTGCTGTCGGAGGAGATAAAACATTTTTATTTCCTGCTGTTAAAGCAAAAATTATTTGGCCTCGCAGGCCTAGCAAGGGGTTTGGCATTGTTAAATGTGACATAAATGATGTCAATTTCATGTTGGGAGATTTCTATAACCTTGCAATAGGAGGGAGGTATGTTCGATGTGAAGTTAGCACAAAGAATGCAGATTGTATTGCAATTGGTGGGATTGACAAGGAGCTCTCACAAAATGAAATTTTAGATGAATTAAGAGCTGCAACAAGTAGAAGGATTGTGGATTTTTTCTTGGTCAGAGGAGATGGCATTGGAAATCCACCATGCAGTGTCTTGGAAGAGGCACTTCTAAAAGAAATTTCCCCCTTAATGCCCAAAATAAGCCCACACATTAGCTCTTGCAGAGTTCAGGTGTTCCCACCTGAGCCAAGGGATACATTCATGAAAGCTTTCATCACTTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGGAAAGTGTTGCCGGGATGTTTTTCATGGCAGAAGATAATGTGTCAACGGATGTTCCATAGCTCCTTGGTATTTCCTGTACCAGTGTATAGCGTGATTAAGAAAGAACTGGAGGAAGTACTTGCAAGGTTCAAAAATGTGAATGGACTTGAGCTTATCCTGGACAGATTTCCTAATGGTTCCTTCCGAGTGAGAATAACAGCCAATGCCACAAAGACAGTGGCAGACGTTAGAAGACCGCTGGAAGAACTATCAAGGGGGAAAACAATTGAAAATGACACCCTCACCCCGATAGTTGTACAGAACATGTTGACCAGAGATGGCTTTAATCTTAAAAACTCATTACAGGAAGAGACAGGAACTTACATTTTTCTTGACAAGCACAACCTGAGTATCCGGGTTTTTGGTCCCCCTGACAAGGTCGCTTTTGCTCAGCAGAAGCTGATTCAATTGCTTCTCTCTCTCCATGAAAGAAAGCAGTTAGAAATCCATCTCATAGGGAGAGATCTACCTCCTGATCTAATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTCCATGGACTAAAAGAGAAGGTACCTGGGTCAGATCCTATACTCGACACTCGCCGTCAGATTATCTTTCTTCGTGGCAACAAGGAGCTGAAACCAAGAGTGCAGGAAATAATTTTCGAGATTGCACGTTCATGTCATTCTTTGGTTCAGAGACTTTACACTGGACCTACATGCCCAATTTGCTTGTGCGAGGTTGAAGATGGAGTGTGGCTTGAAGGCTGTGGTCATTTGTTCTGCCAGTTGTGTCTGGTTGAGCAATGTGAATCTGCTATTCGAAACCAAGGTAGTTTCCCTATATGTTGTGCGCACAGTGGCTGTGGACATCCCTTTCTGATTGCAGACTTGAGATCTCTCTTATCATATGTTAAGTTGGAGGAACTTTTCAACGCTTCTTTGGGAGCTTTTGTGGCCTCAAGTGGGGGAACTTTCAGGTTTTGCCCATCTCCTGACTGCCCTTCAATTTATCGTGTTGCTGATCCCGATGAACCTGGTGAGCCATTTGCTTGTGGGGTATGTTACTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCATATGTTTCATGTGATAAATACAGAGAGTTCAAGAAAGATCCTGACTCATCTCTGAAGGAGTGGTGCAAGGGAAAAGAACACGTCAAGTGTTGCCCCGTGTGTGGGTTTACAATTGAGAAAGTCGATGGGTGCAACCACATTGAGTGCAAGTGTGGAAAACATGTCTGCTGGGTTTGCTTGGAGTTTTTTGGAAGCAGTGAGGATTGTTATAGCCATTTGAGAAACATACACATGACCTACATATAA 5247 0.4338 MKKFNSHNATTTTTRHHHYSQLQPPPPSPHGGHNSRPSRHSFYHWKPGVHSPANNSTVRRPNFVITLLPGRRSFLRDDVAAIISECNSKPDNTSFSGSDRVTAVLGFRQWCDALDAVGWFWQSRLKEMHDLTPELTSYVVVHSDMHELERRLKNLFSYHVKCLMEGKEVKRLNVEIERLSKEIESVSKMLSKPLPIPVYNQRKEKKKGFETEKKLIEKRVREFKNAMECLVKKFEEEEEEEEEEEEEENNEESVASVFKFEGRLDWMKVHCMIMRERRRLEEGLPIYAYRTDIIQKVHSQQVTVLIGETGSGKSTQLVQFLADSGIGANESIVCTQPRKIAAKSVSQRVQEESSGCYGDNSIVCYSTFSSSHRFNSRITFMTDNCLLQHYMSDKNLLGVSCIIIDEAHERSLNTDLLLALIKNLLSWRVDMRLVIMSATADAKQLSDYFYGCGILHVLGRNFPVDVRYVPSDNTGHAGSAVIASYVSDTVRVATEIHKTEKEGSILAFLTSQLEVEWACENFRDPLAVSLPLHGKLSSEEQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDCRFDPSTGMNVLKVCQISQSSALQRAGRAGRTEPGWCYRLYSEADYQSMEPTQEPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSSSSIEMAIKNLIQLGVIRLNKNVHELTHEGRYLVRMGVEPRLGKLILGCSRHGLGREGVVLAALMANASTIFCRVGNEDDKNRSDCLKVQFCHCDGDLFTLLSVYKEWEALPREGRNKWCWENSINGKSMRRCQDTIMELESCLERELCLVTPSYWHWNPSKPSDYDKYLKMVILSSHAENVAMYSGCDQLGYEVAQTGQLVQLHPSCSLRVFAHKPSWVVFGELLSVSNNYLVCVTAFDFDSLYNLSPPPPFDVSKVEKRKLQMRRLTGLGSILLKKFRGKGNSSMLGLTSRIRKACMDERIFIEVNAGKNDIQLYATSHDMETALGFVNDVLEYEKKWLHTECVEKCLYHGVSPSVALFGSGAEIKHLELEKRFLSIDVCHPNINAIDDKELLMFFDKNTSGGICAVQKFTGTVKDVEESEKWGKITFISPDAAEIAADLDGEEFCGSPLKVVPSQTAVGGDKTFLFPAVKAKIIWPRRPSKGFGIVKCDINDVNFMLGDFYNLAIGGRYVRCEVSTKNADCIAIGGIDKELSQNEILDELRAATSRRIVDFFLVRGDGIGNPPCSVLEEALLKEISPLMPKISPHISSCRVQVFPPEPRDTFMKAFITFDGRLHLEAAKALEQIEGKVLPGCFSWQKIMCQRMFHSSLVFPVPVYSVIKKELEEVLARFKNVNGLELILDRFPNGSFRVRITANATKTVADVRRPLEELSRGKTIENDTLTPIVVQNMLTRDGFNLKNSLQEETGTYIFLDKHNLSIRVFGPPDKVAFAQQKLIQLLLSLHERKQLEIHLIGRDLPPDLMKQVVKNFGPDLHGLKEKVPGSDPILDTRRQIIFLRGNKELKPRVQEIIFEIARSCHSLVQRLYTGPTCPICLCEVEDGVWLEGCGHLFCQLCLVEQCESAIRNQGSFPICCAHSGCGHPFLIADLRSLLSYVKLEELFNASLGAFVASSGGTFRFCPSPDCPSIYRVADPDEPGEPFACGVCYSETCTRCHLEYHPYVSCDKYREFKKDPDSSLKEWCKGKEHVKCCPVCGFTIEKVDGCNHIECKCGKHVCWVCLEFFGSSEDCYSHLRNIHMTYI 1748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1640 1748 Pfam Helicase associated domain (HA2) 675 769 IPR007502 GO:0004386
Lal17g1640 1748 ProSiteProfiles Zinc finger RING-type profile. 1539 1581 IPR001841 -
Lal17g1640 1748 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 838 917 IPR011709 -
Lal17g1640 1748 Gene3D - 636 679 IPR042035 -
Lal17g1640 1748 Gene3D - 461 633 IPR027417 -
Lal17g1640 1748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 458 IPR014001 -
Lal17g1640 1748 SMART helicmild6 516 614 IPR001650 -
Lal17g1640 1748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1536 1613 IPR013083 -
Lal17g1640 1748 MobiDBLite consensus disorder prediction 1 56 - -
Lal17g1640 1748 MobiDBLite consensus disorder prediction 234 254 - -
Lal17g1640 1748 Coils Coil 213 256 - -
Lal17g1640 1748 MobiDBLite consensus disorder prediction 1 21 - -
Lal17g1640 1748 CDD SF2_C_RHA 462 622 - -
Lal17g1640 1748 PANTHER ATP-DEPENDENT RNA HELICASE 101 1500 - -
Lal17g1640 1748 PANTHER ATP-DEPENDENT RNA HELICASE 1570 1663 - -
Lal17g1640 1748 SMART ibrneu5 1672 1736 IPR002867 -
Lal17g1640 1748 SMART ibrneu5 1606 1671 IPR002867 -
Lal17g1640 1748 SMART ha2_5 674 770 IPR007502 GO:0004386
Lal17g1640 1748 Coils Coil 169 189 - -
Lal17g1640 1748 SUPERFAMILY RING/U-box 1538 1597 - -
Lal17g1640 1748 Pfam IBR domain, a half RING-finger domain 1615 1671 IPR002867 -
Lal17g1640 1748 ProSitePatterns Zinc finger C2H2 type domain signature. 1723 1744 IPR013087 -
Lal17g1640 1748 CDD DEXHc_RHA-like 301 457 - -
Lal17g1640 1748 Pfam Helicase conserved C-terminal domain 496 613 IPR001650 -
Lal17g1640 1748 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 400 409 IPR002464 -
Lal17g1640 1748 Gene3D - 224 460 IPR027417 -
Lal17g1640 1748 ProSiteProfiles TRIAD supradomain profile. 1535 1748 IPR044066 -
Lal17g1640 1748 ProSitePatterns Zinc finger RING-type signature. 1555 1564 IPR017907 -
Lal17g1640 1748 SUPERFAMILY RING/U-box 1693 1737 - -
Lal17g1640 1748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 491 654 IPR001650 -
Lal17g1640 1748 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 101 1500 - -
Lal17g1640 1748 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1570 1663 - -
Lal17g1640 1748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 778 IPR027417 -
Lal17g1640 1748 SMART ultradead3 282 467 IPR014001 -
Lal17g1640 1748 MobiDBLite consensus disorder prediction 234 251 - -
Lal17g1640 1748 Gene3D - 1667 1746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1640 Lal-Chr17 17716894 17724751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1640 1554 1730 C3H Transcription Factor Family AT2G31770 27.473 4.35e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1640 K12818 - gmx:100810008 2519.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1308 21 16372863 16379278 Lal17g1640 17 17716894 17724751 LSH