Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1635 ATGGCTATTACACCTTTTGGTATCACATTTTCTACTCAATGGGGAATTCCTCCTCATATTTTCACCAAATCCAGTATCATGGCCAAGGTTGCATCATCATCTTCCACCCAAAATAAATACTTAAGTTCTCTTCCCTGCAGTGTTACAAGCAGGACGGGGTTTATGGCTGCCTCAAGTTCGAGCTTTTTTTCCGGGGATTCCTTGCGTGCACTATACAACATGGGTTCATCTCCATCTTTGCATCACCGCAGGGGATCGATGTTGATAGTTAGAGCAGATGCAGATTACTATTCTGTCCTTGGAGTGTCAAAAAATTCTAGCAAATCCGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGAAATTATCATCCAGATGTGAACAAAGAACCTGGTGCAGAACAGAAGTTTAAGGACATTAGCAATGCATATGAGGTCTTATCAGATGATGAAAAGCGATCCATATATGACACTTATGGAGAGGCTGGGCTTAAAGGTTCAGCAGGAATGGGGGGCATGGGGGATTTCAACAATCCCTTTGACCTGTTTGAGACATTGTTTGAGGGCATGAATAGTGGTGGCAGGAACTCCAGAGGTTCTAGGAATGGAGCAGTTGAAGGTGAAGATGAGTATTACAGTCTAGTTTTAAACTTCAAAGAAGCAGTTTTTGGAGTAGAGAAGGAGATAGAGATTAGACGATTGGAGAGCTGTGGAACTTGCAATGGTACAGGGGCTAAACCAGGGACTAAGTCATCCAGATGTAGCACTTGTGCAGGTCAAGGTCGTGTTGTCTCACAAACAAGGACTCCACTAGGTATCTTTCAGCAGACTATGACCTGCTCTTCCTGCAATGGGACTGGAGAAACTTCCACACCTTGCAATACATGTTCCGGGGATGGTCGAGTCAGGAGAACAAAGCGGATAAGTCTCAAGGTTCCAGCTGGAGTGGATTCTGGTAGTCGATTAAGGGTCCAAAATGAAGGAAATGCTGGAAGGCGTGGAGGTCCTCCAGGCGATCTCTTTGTTATCCTTGAAGTTATCCCCGACCCTGTCCTTAAACGTGACGACACCAACATTTTATGCACCTGTAAGGTTTCTTATATTGATGCAATCTTGGGGACTACAACTAAGGTTCCTACTGTAGATGGCATGGTAGACTTAAAAATCCCGGCTGGGACTCAACCAGGCTCGACACTTGTTATGGCTAGGAAAGGTGTTCCCCGGCTGAATAAAAGCAACATGCGGGGTGATCAATTGGTCCGTGTGCAAGTTGAAATCCCTAAAAGATTGAGCGCCGATGAGAGAAAACTTATTGAAGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACAACAAGTAGATGA 1362 0.4471 MAITPFGITFSTQWGIPPHIFTKSSIMAKVASSSSTQNKYLSSLPCSVTSRTGFMAASSSSFFSGDSLRALYNMGSSPSLHHRRGSMLIVRADADYYSVLGVSKNSSKSEIKSAYRKLARNYHPDVNKEPGAEQKFKDISNAYEVLSDDEKRSIYDTYGEAGLKGSAGMGGMGDFNNPFDLFETLFEGMNSGGRNSRGSRNGAVEGEDEYYSLVLNFKEAVFGVEKEIEIRRLESCGTCNGTGAKPGTKSSRCSTCAGQGRVVSQTRTPLGIFQQTMTCSSCNGTGETSTPCNTCSGDGRVRRTKRISLKVPAGVDSGSRLRVQNEGNAGRRGGPPGDLFVILEVIPDPVLKRDDTNILCTCKVSYIDAILGTTTKVPTVDGMVDLKIPAGTQPGSTLVMARKGVPRLNKSNMRGDQLVRVQVEIPKRLSADERKLIEELADLSKGKTATTSR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1635 453 TIGRFAM DnaJ_bact: chaperone protein DnaJ 95 442 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lal17g1635 453 Hamap Chaperone protein DnaJ [dnaJ]. 92 449 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lal17g1635 453 CDD DnaJ_C 207 429 - -
Lal17g1635 453 SUPERFAMILY HSP40/DnaJ peptide-binding domain 204 359 IPR008971 GO:0006457|GO:0051082
Lal17g1635 453 Pfam DnaJ central domain 236 299 IPR001305 GO:0031072|GO:0051082
Lal17g1635 453 Gene3D DnaJ domain 92 199 IPR036869 -
Lal17g1635 453 CDD DnaJ 95 148 IPR001623 -
Lal17g1635 453 Gene3D - 236 299 - -
Lal17g1635 453 Gene3D - 206 341 - -
Lal17g1635 453 PANTHER BNAA01G34580D PROTEIN 39 452 - -
Lal17g1635 453 ProSitePatterns Nt-dnaJ domain signature. 136 155 IPR018253 -
Lal17g1635 453 Pfam DnaJ domain 95 156 IPR001623 -
Lal17g1635 453 PRINTS DnaJ domain signature 97 115 IPR001623 -
Lal17g1635 453 PRINTS DnaJ domain signature 115 130 IPR001623 -
Lal17g1635 453 PRINTS DnaJ domain signature 131 151 IPR001623 -
Lal17g1635 453 PRINTS DnaJ domain signature 151 170 IPR001623 -
Lal17g1635 453 SUPERFAMILY Chaperone J-domain 91 190 IPR036869 -
Lal17g1635 453 ProSiteProfiles dnaJ domain profile. 95 159 IPR001623 -
Lal17g1635 453 SMART dnaj_3 94 151 IPR001623 -
Lal17g1635 453 Pfam DnaJ C terminal domain 211 426 IPR002939 -
Lal17g1635 453 ProSiteProfiles Zinc finger CR-type profile. 223 304 IPR001305 GO:0031072|GO:0051082
Lal17g1635 453 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 39 452 - -
Lal17g1635 453 CDD DnaJ_zf 236 299 IPR001305 GO:0031072|GO:0051082
Lal17g1635 453 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 223 302 IPR036410 -
Lal17g1635 453 Gene3D - 346 452 - -
Lal17g1635 453 SUPERFAMILY HSP40/DnaJ peptide-binding domain 351 437 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1635 Lal-Chr17 17679843 17683474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1635 96 158 C2H2 Transcription Factor Family AT1G74250 44.928 6.45e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1635 K03686 - gmx:100786143 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1621 4 20376937 20381355 Lal17g1635 17 17679843 17683474 LSH