Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1623 ATGGGAGACATTTCACCAGAGAGGAAATCTGGTTGTGGCTTAATATCAGCAGTGTTCAGGAGAAAAGGTTCATCATGGTCAGGTAAATCAGTCTCTGCTGGCTCTACTCCGACGAGTTCGATCAATGGCAGCGAATTTGCGAAAAGGCGCAGAGGTGGTTCGGACATTAGTGCTGCTTCAGTTGAAAATACTTCATCTATGGCCTCAAAATATTCATCATCTAGTTACATTGTTACACAATCTCCTTCTTTATCCAACATCCCTCAAATTCCAACAACAAAACATGTTGCTCAACAAAGGAAACAACAACCAAATGAAACTGCAATGGCAGTGCATGGTGGTGGTTCTTCGGGAACTAGAGGCGTATCGAAAGTGGCGCCGAGTCAATGCTATGTGAATCAAGGAAGAAAGGTGCCAAGAGAAGTGGTTGGAATTTCTGGTGAGCTTGAAAGCATGATTGCTGATCATCAAAAATCAAAGGGAGGTAACAACAACCTTGTTAGAGCCTCTTCTAGCAATGTAATGTTGTATGGTAATTTAGGTAACCTTAGACAAGGTGGACAAAATACTAATTCTCATAATGTAATGGAAAATCATTACAATGTTGCTAAAGGAAATAAAGGGTATACAAATAGTAACAGTAATACAATGGAGAATGTTGGTTATAGGAGTAATAAAGAGGTTGTTAAACAACCAAGTAAAGAACAATTATGCAGGGCTTTATCTACTAGAATGGATCCTGAACAATTGAAAATAATGGGCAATGAGGATTATAAGAATGGAAGATTTGCAGAAGCATTGTCTCTTTATGATGCAGCTATTGCAATTGATCCTAATAAGGCTTCTTATAGGAGCAATAGAAGTGCAGCTTTAACTGCTCTTGGAAGACTTTTGGAGGCTGTTTTTGAATGCAGAGAAGCTATTAGAATTGATTCTCATTACCATAGAGCTCATCATCGGTTGGGAAATTTGTACTCTAGATTAGGAGATGTAGATAGTGCCTTGTATCATTATAAACAAGCAGGAGCAGAAGCAGATCCTGATGAAGTTGCTAAAGTTAAGAATCTTCAGATCCATTTACACAAGTGCACTGAAGCTCGTAGATTAGGAGATTGGAACACACTTATCAATGTCACCAACAATGCTATATTATATGGTGCAGATTCTGCTCCACAAATATTTGCATTGCAAGCTGAAGCATTGTTAAAGCTCCATAGGCATCAAGATGCAGAGAAAGTAATGTCAAAGTGCACAAATATTGATGTTGATGAGTGTACTAAGTTTTTTGGACCAATTGGTAATGCAAATTTGTTGGTTACACGTGCTAAGGTTGATTTAGTTGCTGGCAGATTTGAAGAAGCTTTAGAAGCAGCTAATAAAGCAACTAGGCTAGACTCAAATAACAAGGAAGCAAGTAAAGTGTTGAGAAAAGTTAAAGCTATTACAGCTGCTAGAACAAAAGGAAATGAACTTTTTAAGGCATCAAAATTTTCTGAGGCATGTTTTGCTTATGGAGAGGGCCTTGAACATGACCCATATAACTCTCTTTTGCTTTGCAACCGAGCTGCTTGTAGATCAAAATTAAGCCAATATGAAAAAGCTGTTGAAGATTGCAATGCTGCCCTTAACTTAAGACCATCTTACACAAAAGCTAGGCTAAGAAGGGCTGATTGTAATGCCAAGTTGGAAAGATGGGAAGCTTCAATACAAGACTATGAAATATTGATAAAAGAGACACCAGAAAATGAGGAAGTAAACAAGGCCTTGATGGAGGCTCAAACAAAGCTTATGAAAAGGAGAAGTGGTTCATAG 1812 0.3825 MGDISPERKSGCGLISAVFRRKGSSWSGKSVSAGSTPTSSINGSEFAKRRRGGSDISAASVENTSSMASKYSSSSYIVTQSPSLSNIPQIPTTKHVAQQRKQQPNETAMAVHGGGSSGTRGVSKVAPSQCYVNQGRKVPREVVGISGELESMIADHQKSKGGNNNLVRASSSNVMLYGNLGNLRQGGQNTNSHNVMENHYNVAKGNKGYTNSNSNTMENVGYRSNKEVVKQPSKEQLCRALSTRMDPEQLKIMGNEDYKNGRFAEALSLYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIDSHYHRAHHRLGNLYSRLGDVDSALYHYKQAGAEADPDEVAKVKNLQIHLHKCTEARRLGDWNTLINVTNNAILYGADSAPQIFALQAEALLKLHRHQDAEKVMSKCTNIDVDECTKFFGPIGNANLLVTRAKVDLVAGRFEEALEAANKATRLDSNNKEASKVLRKVKAITAARTKGNELFKASKFSEACFAYGEGLEHDPYNSLLLCNRAACRSKLSQYEKAVEDCNAALNLRPSYTKARLRRADCNAKLERWEASIQDYEILIKETPENEEVNKALMEAQTKLMKRRSGS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1623 603 Pfam Tetratricopeptide repeat 317 348 IPR019734 GO:0005515
Lal17g1623 603 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 600 IPR044534 -
Lal17g1623 603 MobiDBLite consensus disorder prediction 24 45 - -
Lal17g1623 603 PANTHER OS01G0616333 PROTEIN 5 600 - -
Lal17g1623 603 SUPERFAMILY TPR-like 246 588 IPR011990 GO:0005515
Lal17g1623 603 Pfam Tetratricopeptide repeat 254 311 - -
Lal17g1623 603 Pfam Tetratricopeptide repeat 528 582 - -
Lal17g1623 603 ProSiteProfiles TPR repeat profile. 435 468 IPR019734 GO:0005515
Lal17g1623 603 Gene3D Tetratricopeptide repeat domain 245 601 IPR011990 GO:0005515
Lal17g1623 603 MobiDBLite consensus disorder prediction 24 63 - -
Lal17g1623 603 SMART tpr_5 391 424 IPR019734 GO:0005515
Lal17g1623 603 SMART tpr_5 549 582 IPR019734 GO:0005515
Lal17g1623 603 SMART tpr_5 247 280 IPR019734 GO:0005515
Lal17g1623 603 SMART tpr_5 481 514 IPR019734 GO:0005515
Lal17g1623 603 SMART tpr_5 435 468 IPR019734 GO:0005515
Lal17g1623 603 SMART tpr_5 281 314 IPR019734 GO:0005515
Lal17g1623 603 SMART tpr_5 515 548 IPR019734 GO:0005515
Lal17g1623 603 SMART tpr_5 315 349 IPR019734 GO:0005515
Lal17g1623 603 ProSiteProfiles TPR repeat profile. 247 280 IPR019734 GO:0005515
Lal17g1623 603 Coils Coil 555 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1623 Lal-Chr17 17598626 17603097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1623 238 344 Glycosyltransferase AT3G11540 30.769 3.02e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1610 4 20293531 20297343 Lal17g1623 17 17598626 17603097 LSH