Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1621 ATGACTCAGATGCAGAATGTGGTAATGTCTGAAACTAAATCTGAAGTTGTGGCACAAAATAAGCCACAACAAGGAGGAGGGTACATTTCCATTTCTAGGAATATTTTGAAGAACCTTGAAATCAATGGAGGAGAAGGACAAAGAGTAGTTAATGGTTTGATTGAGTCCATGAGAGCTTCATCTCCAACACACACTTCTTTGTCTCAAGACCAAACCTCTTGGATTCTTCATCATCCATCAGCATTAGACATGTTTGACCAAATTATGGAAGCATCAAGGGGAAAACAAATAGTGATGTTTCTTGATTATGATGGTACACTCTCACCTATAGTGGAAGACCCTGACCGTGCTTACATGTCCAATTCGATGAGGAAAACACTGAGGAAACTTGCAAGGTCTTTTCCAACAGCAATAGTGACTGGCAGATGCAAAGATAAGGTGTACAATTTTGTTCGCTTAGAAGAGTTATATTATGCAGGAAGCCATGGCTTAGATATTAAAGGGCCAAGTAGAAGCTCCAAGTACATCAAAGTGAGTCACCAACCTAATAGGAAAGCAGAGACACTTATTTTTCAACCTGCTAGTCAATTTCTTCCCATGATAGATGAGGCGTACCAAAAACTTGTTGATGAGACAAAATCAATTCCTGGATCCCTTGTGGAAAATAACAAGTTCTGTGTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAATTGGCACACCAAGTGAAATCAGTATTAAAGAACTACCCAAAGCTTCGTCTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCAATATTAAATGGGACAAGGGAACAGCCTTAGAATTTTTATTAGAATCACTTGGATTGGCCAACTGTAATGATTTCTTTCCTATTTATATTGGTGATGATCAAAGTGATGAAGATGCTTTCAAGAAATTGAGAGACAGAGGACAAGGTTGTGGGATTCTTGTCTCTAAATTTCCAAAGAAAACAAGTGCCTCTTACTCTTTACAAGAACCCAATGAGGCAAGTTATGGACTTTCTTCAACGTTTGGTAGAGTGGAAAAAGGTGTCAATGCGTGCACGTCCCTGGATGTTAATGTGTACATGAAATGA 1113 0.3899 MTQMQNVVMSETKSEVVAQNKPQQGGGYISISRNILKNLEINGGEGQRVVNGLIESMRASSPTHTSLSQDQTSWILHHPSALDMFDQIMEASRGKQIVMFLDYDGTLSPIVEDPDRAYMSNSMRKTLRKLARSFPTAIVTGRCKDKVYNFVRLEELYYAGSHGLDIKGPSRSSKYIKVSHQPNRKAETLIFQPASQFLPMIDEAYQKLVDETKSIPGSLVENNKFCVSVHFRCVDEKKWSELAHQVKSVLKNYPKLRLTQGRKVLEIRPNIKWDKGTALEFLLESLGLANCNDFFPIYIGDDQSDEDAFKKLRDRGQGCGILVSKFPKKTSASYSLQEPNEASYGLSSTFGRVEKGVNACTSLDVNVYMK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1621 370 Gene3D - 183 270 - -
Lal17g1621 370 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 2 346 - -
Lal17g1621 370 Pfam Trehalose-phosphatase 100 339 IPR003337 GO:0003824|GO:0005992
Lal17g1621 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 346 IPR044651 GO:0004805|GO:0005992
Lal17g1621 370 Gene3D - 99 336 IPR023214 -
Lal17g1621 370 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 99 315 IPR006379 -
Lal17g1621 370 SUPERFAMILY HAD-like 98 346 IPR036412 -
Lal17g1621 370 TIGRFAM T6PP: trehalose-phosphatase 95 341 IPR003337 GO:0003824|GO:0005992
Lal17g1621 370 CDD HAD_TPP 98 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1621 Lal-Chr17 17578966 17583424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1621 99 346 Trehalose Biosynthesis Gene Families AT1G70290 25.969 3.75e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1621 K01087 - gmx:100794430 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1608 4 20274489 20278435 Lal17g1621 17 17578966 17583424 LSH
Lal21g1283 21 16103889 16108645 Lal17g1621 17 17578966 17583424 LSH