Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1620 ATGGCTTACAATAATAATAGCAACATGACCCAAGATTTCTTAGAGCCATGTAGTGAAGAGTTAATGAAAAAAGCACTTGAAACTTATGTGAAAAATGATTCCTATTCATATAACTCTTCCTTCTCTATTTCAAATTCTACCCCAAACCCATCATCACTTTCTTCTTATTTTTCCAATTTATATCCAAACACAAGTTCCATCAACCTAAATCAACTCACACCATCTCAACTTCTTCAAATTCAACCTGAAATCCATATTCAACAACAACAACAACATAGGCTAATTCAATTGCAACATACAAATCAACATTCCTTAAGCTTTCTTTGCCCTAAACATGTTCCTATGAAGAACATAGGTGGTCCTATTGCAAAAGCAACAAAACTATATCGTGGAGTGAGGCAAAGACATTGGGGAAAATGGGTAGCTGAGATAAGACTACCAAAAAATAGAACTCGTCTTTGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCTCTGGCTTATGATACTGCAGCATTTAAGCTAAGGGGTGATATTGCTAGGCTTAATTTTCCTCATTTACTTCATAATGGTGCTCTTGTTTATGCTGAATTTGAAAACTTTAACCCTCTTCCTTCTTCTGTTGATGCAAAGCTCCAAGCTATTTGTGAAAACTTGGACACTAAAATAAAGCAACATCAAGGGAAAATAGAGAAGCTATGTTCTAATGATGTGGCTACAAAGCCTAAGGTGGAGTTTGATGTAGCAAAATGTGAGAGTGAAGATTATAAGGTTGAGATTAATCAAATGTTGTCACCTATGTCTGAAGAATCATCATCATCATTTGTTGGTTCAGCTTCTTCACCAGAATCTGATATCACTTTCTTGGATTTCTCTGATTCTAATGAGAGTAATACCTTTGGATTGGATTTGGGGAAATACCCTTCAGTGGAGATTGATTGGGAAGCTATTTGA 954 0.3585 MAYNNNSNMTQDFLEPCSEELMKKALETYVKNDSYSYNSSFSISNSTPNPSSLSSYFSNLYPNTSSINLNQLTPSQLLQIQPEIHIQQQQQHRLIQLQHTNQHSLSFLCPKHVPMKNIGGPIAKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDTAAFKLRGDIARLNFPHLLHNGALVYAEFENFNPLPSSVDAKLQAICENLDTKIKQHQGKIEKLCSNDVATKPKVEFDVAKCESEDYKVEINQMLSPMSEESSSSFVGSASSPESDITFLDFSDSNESNTFGLDLGKYPSVEIDWEAI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1620 317 Pfam AP2 domain 129 177 IPR001471 GO:0003700|GO:0006355
Lal17g1620 317 SMART rav1_2 128 191 IPR001471 GO:0003700|GO:0006355
Lal17g1620 317 Coils Coil 216 236 - -
Lal17g1620 317 Gene3D AP2/ERF domain 128 186 IPR036955 GO:0003700|GO:0006355
Lal17g1620 317 ProSiteProfiles AP2/ERF domain profile. 128 185 IPR001471 GO:0003700|GO:0006355
Lal17g1620 317 CDD AP2 127 187 IPR001471 GO:0003700|GO:0006355
Lal17g1620 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 6 317 - -
Lal17g1620 317 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Lal17g1620 317 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Lal17g1620 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 6 317 - -
Lal17g1620 317 SUPERFAMILY DNA-binding domain 128 186 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1620 Lal-Chr17 17562948 17563901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1620 15 317 AP2-EREBP Transcription Factor Family AT4G39780 48.039 6.53e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal17g1620 AP2 9.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1620 K09286 - gmx:100818839 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1607 4 20263943 20264869 Lal17g1620 17 17562948 17563901 LSH