Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1614 ATGGTAGGTCAAACCAATGGTAAGGTGAGTTCCACGTTAGAAAAGTTGATGGAGCTTAAGAACACAAGCCATAACATAAGGGCTCAGTGGGTGTTGAATCCTCCCGAGCCACCATGCTTGTGGCGTCAGGTCTTAGACAACATCAAAGGAACCCTCTTACATAGAAACAGATTACTCTCTTCTCTTAGGAATCAATCTTTGTCCAAAAATGTGTTTGAGTTGTTGCAGAAGTTGTTCCCTATTATTGGTTCTTTCAGAGAATATAATATCCAAAAATTCAAGTATGATTTCATGGCGGGTCTAACCCTTGCAATCCTAGCCATTCCACAGAGTATGGGATATGCAACTTTGGCGCAGCTAAGTCCTGAATATGGCCTATATTCAAGTATTATCCCACCTCTTATCTATGCTATGTTGGCGAGTTCAAGGGAGATAGTGATTGGACCTATAGCTGTTGATTCAATGCTTCTATCCTCACTGATTCGGAATTTGAAAGATCCTATCCATGATTCTGTTGGTTACACTCAACTTGTTCTTACTGCAACTTTTTTGGTTGGTGTCTTTCAACTTGCTTTTGGGCTCTTTAGGTTTGGGTTTCTTGTGGATTATCTTTCCCATGCAACAATAGTGGGGTTTTTGGCAGCAGCTGCCTTAGGCATTGGACTACAACAATTGAAAGGACTACTTGGGATCAAACATTTTACTAACAAAACTGATTTAATTTCTGTCATGAAATCTGTTTGTACATCATTAAGTAACCAAGGTAGAAGGAACAAGAAACTATTTTGGTTATCAACAGCTGGTCCTCTCTTTTGGGTTATTGTATTCTCTGTGATTGCATATAGAATTAATCTTCATAAGCTTAAAGTTGAGGACTACATAGTTGAAGTCTTAGGACCAATCAAAGGAGGTAGCTTGAAGTCAAGCTCACTCTACAAGATACATGTTGGTGATGAATTTGTGGTTCCTTTGATCAAAATAGGGTTTACAATTGCTGTTATTTCAACCACGATGGGTATATCTGTTGGACGATCATTTGCATCACTAAGAGGAAACCATCTTGATCCCAACAAAGAAATGGTATCACTAGGCCTAATGAACATTGTTGGATCCTTCACTTCTTGCTATGTTGCAACAGGTTCTCTAGCACGTACTGCTCTAAAGTACAATGCTGGCTCAGAAACAATGGTATCAAGCATAGTCATGGCACTCATGGTCCTATTGTCACTTAGATTTTTGACAGGACTCTTATATTTCATTCCAAAAGCAGTCCTAGCAGCAATCATTCTTTCTGCTATATCAGGACTCATTGACCTTAAGAAAGCATATGAAATTTGGAAAGTTGATAAATTTGATTTCCTTGCTTGTATTGGAGCATTCATCGGTGTGTTGTTTGCATCTGTTGAAATAGGCCTTGCAATTGGGGTCACTATATCATTTTTTAAGATAATAATGATCTCAATTCAACCTGGCATTAGAATTGTTGGAAAGCTTCCTGGAACTTATGACTTTGGTGATGTTGAACAATATCCAATGGCAGTTAAAATTCCAGGATTTTTTATAGTATCTATCAAATCTTCTGTACTTTGTTTTGCAAATGCAACTCTTGTCAGGAAAAGGATTGAAAGGTTCATGACCGAGGAAGAAGTTAAGGATGACAAAGAAGAAAATACCTTTAAATTCGTCATTATTGATACCTCAAGTCTTATGAGTATTGACACTGCAGGAATTGCCTCTCTTGAGGAGTTGAATAAGAGTCTAACAATACATGGAGTGAAACTAGCCATAGCTAACCCTAGGTGGCAAGTAATTCAAAAGCTAAGAGTAGCTAACTTTGTGGACAAAATTGGAGGAAGGGTTTTTCTATCTGTAGGAGAAGCTGTAGAACTATGTATTGGTGCCAAAATGGGAATTGTTTAA 1920 0.3807 MVGQTNGKVSSTLEKLMELKNTSHNIRAQWVLNPPEPPCLWRQVLDNIKGTLLHRNRLLSSLRNQSLSKNVFELLQKLFPIIGSFREYNIQKFKYDFMAGLTLAILAIPQSMGYATLAQLSPEYGLYSSIIPPLIYAMLASSREIVIGPIAVDSMLLSSLIRNLKDPIHDSVGYTQLVLTATFLVGVFQLAFGLFRFGFLVDYLSHATIVGFLAAAALGIGLQQLKGLLGIKHFTNKTDLISVMKSVCTSLSNQGRRNKKLFWLSTAGPLFWVIVFSVIAYRINLHKLKVEDYIVEVLGPIKGGSLKSSSLYKIHVGDEFVVPLIKIGFTIAVISTTMGISVGRSFASLRGNHLDPNKEMVSLGLMNIVGSFTSCYVATGSLARTALKYNAGSETMVSSIVMALMVLLSLRFLTGLLYFIPKAVLAAIILSAISGLIDLKKAYEIWKVDKFDFLACIGAFIGVLFASVEIGLAIGVTISFFKIIMISIQPGIRIVGKLPGTYDFGDVEQYPMAVKIPGFFIVSIKSSVLCFANATLVRKRIERFMTEEEVKDDKEENTFKFVIIDTSSLMSIDTAGIASLEELNKSLTIHGVKLAIANPRWQVIQKLRVANFVDKIGGRVFLSVGEAVELCIGAKMGIV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1614 639 Pfam STAS domain 510 627 IPR002645 -
Lal17g1614 639 CDD STAS_SulP_like_sulfate_transporter 510 622 - -
Lal17g1614 639 PANTHER EARLY NODULIN-70 20 255 - -
Lal17g1614 639 PANTHER EARLY NODULIN-70 255 637 - -
Lal17g1614 639 Gene3D STAS domain 489 632 IPR036513 -
Lal17g1614 639 ProSiteProfiles STAS domain profile. 529 631 IPR002645 -
Lal17g1614 639 Pfam Sulfate permease family 93 253 IPR011547 GO:0016021
Lal17g1614 639 Pfam Sulfate permease family 256 457 IPR011547 GO:0016021
Lal17g1614 639 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
Lal17g1614 639 PANTHER SULFATE TRANSPORTER 20 255 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lal17g1614 639 PANTHER SULFATE TRANSPORTER 255 637 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lal17g1614 639 SUPERFAMILY SpoIIaa-like 515 631 IPR036513 -
Lal17g1614 639 TIGRFAM sulP: sulfate permease 80 624 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1614 Lal-Chr17 17529838 17535322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1614 27 636 Inorganic Solute Cotransporters AT5G10180 50.551 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1614 K17469 - gmx:100817841 762.296