Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1612 ATGGTGACCATGCAGATCGAATATAAAGAAGATAGCAGCATGTGGATTTCTGCTTTATTGTTGGCAATATTATTTCAAGATAGAGATATCATACGAGAAAATGCAACCATGAAATCTATACCAGCCCTTGCCAATTTATTAAAGTCAGAGGAATCAGCCAACAGATATTTTGCTGCACAAGCAATTGCTAGCCTAGTCTGTAATGGCAGTAGGGGAACTCTTCTGTCTGTGGCAAATTCCGGGGCAGCAGGTGGACTTATCACCTTGCTTGGCTGTGCAGATTCTGATATACTGGATCTTCTACAATTGTCGGAGGAATTTTCATTGGTGCGCTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCGCCTCTCGAAAGGCAATACCTGCCCTAGTTGATTTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAACAATTGGGATTTTGACTCAGCTTGCTGGAGACTGTACACCAAATACGATTCTAATGGTAGAGTCTGGAGCTTTAGAGGCACTTACTAAGTATCTTTCGCTGGGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGCAGTGCTGAGATACGGAGACATGAGTCAGCTTTTGGGGCTGTTCCTCAACTTGTGGCTGTACTACGATTAGGAGGAAGAGCTTCAAGGTATAGTGCTGCAAAAGCCTTGGAAACTTTATTCTCTGCTGATCATATTAGAAATGCAGAGAGTGCTCGACAGGCTGTTCAACCCTTGGTGGAGATTCTTAACACTGGTTTAGAGAGGGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGCTACTGAGTGAAAACCCTTCAAGGGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTCCTTTGCAGGATACTTTCATCAGACTGCTCACTGGACCTCAAAGGGGATGCTGCTGAATTATGCTGTGTTCTTTTTGGAAATACAAGGATTCGGTCCACGATGGCTGCTGCCCGCTGTGTTGAACCTCTGGTCTCTCTCCTTGTTTCTGAGTATAGTCCTGCTCAACATTCAGTTGTCCGGGCTTTGGACAAGCTTGTAGATGATGAGCAACTGGCTGAGTTAGTTGCCGCTCATGGTGCAGTTATTCCTCTAGTCGGCCTACTGTATGGTAGGAACTATGTGCTTCATGAGGCTATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGATAGACCTGCTTGTAAAATGGAAATGGTGAGAGCTGGAGTTATTGAAGGCATGCTTGACATCCTACATGAAGCACCTGATTACCTATGTGCGGCTTTTGCCGAATTGTTGCGTATATTGACCAATAACGCTAACATAGCTAAAGGACCATCTGCTGCTAAAGTGGTTGAACCCTTGCTCTTGTTGCTGACTAGACATGAATTTGGGCCTGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCGCAGTGTCGTGCTGATTATTCATTGACTTCTCACCAAGCTATCGAGCCACTTGTTCCCTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTTCTTTTAGAAGAACACCTTCAGAGAGATTCTGTGGCACAGCAAGTAATTGGCCCTCTTGTACGAGCTCTTGGTTCTGGTATACATATATTGCAGCAGAGAGCTGTAAAGGCTCTGGTTGGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTTTTGAAATTTCCAAAGTGATATTGCAAGAAGATCCTTCCCTTCCTCATGCTGTATGGGAGTCTGCTGCCTCTATTTTGGCAAGTATTCTTCAATTTAGTTCTGAATTCTACTTGGAAGTTCCTGTTGCTGTTTTGGTAAGGCTGCTTCGGTCTGGCTTAGAGGGCACAGTTGTTGGTGCGTTGAATGCTCTTCTTGTATTGGAAAGTGATGATGGAACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAACTCCTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACCAAATCAGCTATCTTACCATTATCCCAGTACCTCTTGGATCCACAAACCCAAGCACAGCAGGCAAGGTTGTTGGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGACTTGCTCGAACACCTGATGCAGTTTCAGCTTGTCGTGCTTTAGTAAATGTGCTTGAGGACCAACCAACCGAGGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCTGTTGCAGAGGCCGGTGGTGTTCAGGTCATATTGGATCTGATAGGTTCAAGTCATCCTGAAACATCAGTTCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCACACTATTCAAGAGTATGCCTCCAGTGAAACAGTCAGGACGATAACTGCTGCTATCGAAAAAGATTTATGGGCTACTGGAACTGTGAATGATGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGACTGAGAGCAACCGAACCAGCAACTCTTAGCATTCCACATCTGGTTACATCCTTAAAGACAGGCTCAGAGGCTTCTCAAGAAGCTGCATTGGATGCACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCCCAGTCCATAGCAGCTGCAGATGCTATCCCTTTGCTGCAGTACTTAATCCAGTCCGGACCACCTCGGTTTCAGGAGAAGGCAGAATTCTTATTGCAGTGTTTGCCAGGGACGTTGGTCGTGATCATCAAGCGGGGTAATAATATGAAGCAGTCTGTTGGTAACCCAAGTGTTTATTGTAAACTTACACTTGGCAACACTCCTCCAAGGCAAACCAAGGGGACAAGGATTTCCAGCATGCTTATTGAATATACTAATGACCATGAGAATGAATGTGTTGATCAGGTGGTCTCAACTGGCCCTAATCCAGATTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAAAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGAAAAGTTACAATCCAGATTGATAGGGTGGTAATGCTGGGAGCAGTATCTGGAGAGTATACACTGTTACCAGAAAGCAAAAGTGGCCCATCAAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 3339 0.44 MVTMQIEYKEDSSMWISALLLAILFQDRDIIRENATMKSIPALANLLKSEESANRYFAAQAIASLVCNGSRGTLLSVANSGAAGGLITLLGCADSDILDLLQLSEEFSLVRYPDQVALERLFRVDDIRVGAASRKAIPALVDLLKPIPDRPGAPFLTIGILTQLAGDCTPNTILMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVPQLVAVLRLGGRASRYSAAKALETLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSDCSLDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVSEYSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVRAGVIEGMLDILHEAPDYLCAAFAELLRILTNNANIAKGPSAAKVVEPLLLLLTRHEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLVPLLDSPISAVQQLAAELLSHLLLEEHLQRDSVAQQVIGPLVRALGSGIHILQQRAVKALVGIALIWPNEIAKEGGVFEISKVILQEDPSLPHAVWESAASILASILQFSSEFYLEVPVAVLVRLLRSGLEGTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTPDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSHPETSVQAAMFIKLLFSNHTIQEYASSETVRTITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEASQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKGTRISSMLIEYTNDHENECVDQVVSTGPNPDWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1612 1112 SMART C2_3c 970 1088 IPR000008 -
Lal17g1612 1112 ProSiteProfiles C2 domain profile. 950 1089 IPR000008 -
Lal17g1612 1112 Pfam C2 domain 969 1087 IPR000008 -
Lal17g1612 1112 Gene3D - 590 968 IPR011989 -
Lal17g1612 1112 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 968 1109 IPR035892 -
Lal17g1612 1112 Gene3D - 120 304 IPR011989 -
Lal17g1612 1112 SUPERFAMILY ARM repeat 519 967 IPR016024 -
Lal17g1612 1112 SMART arm_5 250 291 IPR000225 GO:0005515
Lal17g1612 1112 SMART arm_5 337 377 IPR000225 GO:0005515
Lal17g1612 1112 SMART arm_5 669 708 IPR000225 GO:0005515
Lal17g1612 1112 SMART arm_5 378 418 IPR000225 GO:0005515
Lal17g1612 1112 SMART arm_5 505 546 IPR000225 GO:0005515
Lal17g1612 1112 SMART arm_5 168 209 IPR000225 GO:0005515
Lal17g1612 1112 SMART arm_5 796 836 IPR000225 GO:0005515
Lal17g1612 1112 SUPERFAMILY ARM repeat 255 588 IPR016024 -
Lal17g1612 1112 Gene3D - 316 587 IPR011989 -
Lal17g1612 1112 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 1112 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lal17g1612 1112 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 5 1112 - -
Lal17g1612 1112 Gene3D - 8 119 IPR011989 -
Lal17g1612 1112 CDD C2 971 1083 - -
Lal17g1612 1112 SUPERFAMILY ARM repeat 18 315 IPR016024 -
Lal17g1612 1112 Gene3D C2 domain 969 1112 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1612 Lal-Chr17 17505150 17515286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1612 136 397 U-box Gene Family AT1G71020 30.037 1.67e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1612 - - gmx:100818900 1923.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0895 19 12962108 12972844 Lal17g1612 17 17505150 17515286 PCT