Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1610 ATGAGTATTTCCATGGTGGATCAATCTGATTCTTCTCCTCTCGTTCCTCCAAAACCTATTCTTCTTCCTTCCGAGATCGACCTCGAAGCTGGTCCTACCGAACAGATTCAATGCCGAATTTGTCTCGAAACCGATGGTAGGGATTTCATTGCTCCTTGTATGTGCAAAGGTACATCTAAATATGTACACCGTGAATGTCTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCCTTTGCTCACTGCACTACCTGCAAGGCTCCTTATCATTTGCGTGTTCACGTAGCTGCTGATAGGAAATGGCGTACTATGAAATTTCGGTTTTTCGTCACCAGAGACATTTTGTTTATTTTCATAGCTGTTCAGCTTGTCATTTCTTTACTGGCTTACTTGGTTCATCTAATTGATGGTTACCAGCAGTCTTGGCTTCGTATTCTCTGGGGATTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTGTTGTTCTTTGCCTTGCTTGGCCTTTCTGGATGCTTCATTACATGTTATGATCGAAGAGTTCGCAATGATTTGGCACAACCTTGTAGAGAATTATGTCTTTGTTGCTGCCAACCTGGGTAA 606 0.4257 MSISMVDQSDSSPLVPPKPILLPSEIDLEAGPTEQIQCRICLETDGRDFIAPCMCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTMKFRFFVTRDILFIFIAVQLVISLLAYLVHLIDGYQQSWLRILWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1610 201 SUPERFAMILY RING/U-box 33 90 - -
Lal17g1610 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 100 IPR013083 -
Lal17g1610 201 PANTHER BNAA04G12620D PROTEIN 5 201 - -
Lal17g1610 201 Pfam RING-variant domain 38 85 IPR011016 GO:0008270
Lal17g1610 201 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 201 - -
Lal17g1610 201 CDD RING_CH-C4HC3_MARCH 38 86 - -
Lal17g1610 201 ProSiteProfiles Zinc finger RING-CH-type profile. 30 92 IPR011016 GO:0008270
Lal17g1610 201 SMART ringv_2 37 86 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1610 Lal-Chr17 17481817 17492263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1610 5 201 C3H Transcription Factor Family AT2G22120 83.838 2.15e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1610 - - lang:109328511 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1600 4 20171007 20175435 Lal17g1610 17 17481817 17492263 LSH