Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1609 ATGAATTCACCATCCGCGCAGTTTGTTTCCTCAAGAAGCATGAGTGTTTATGATCCTATCCACCAGATTAACATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAGGTGCAACCATACCCTTAATCGACGAGGCAGACTTAAAGTTTGATAGTCAGTCGGAGGATGCTTCTCATGTTATACTGGGAACACCGAACAAGTATGATCAAGAAGCAAGTAAACCTGCTGTTGATAAGACACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGCAAGAGTCGCTTGCGGAAAAAGGCCTATGTGCAGCAGTTAGAGTCGAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACATGCAAGACAGCAGGGATTATATGTTGGTGGAGGGTTGGATTCTAATAATATTGGATTTGCTGGACCTGTAAATTCAGGTTGGTTTGTTATCGTTTCGAGGAGCAAGTTTTCTTCTTGCGCAATAATCTTGTTTGCAATCAATTCTTGCACTCTAAGAAAGAATACTAAATTTTCAGGAATTACGACATTTGAGATGGAGTATGGAATCTGGGTGGAAGAGCAAAATAGACAAATCTTAGAACTGAGAACTGCTTTAAATGCTCATATCGGTGATATGGAACTACGGATACTGGTAGAAGGGATTATGAACCACTATTCCGAAATATTTCGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTATGTTATGTCCGGCATGTGGAAAACAACAGCTGAAAGATTTTTTTTATGGATTGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTCCTTCTTCCTTTGATTGAACCGTTGACGGAGCAACAAAGGCTGGATCTCCAAAACCTTGGGAAATCATGTCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGACAAACTACAGCAAACACTTGCCGAAAGTGTAGCAGCCGGACAACTCATCGAAGGATCTTATATTCAACAGATGGGTTCTGCAATGGAGAAGTTGGAAGCTCTGGTTTGCTTTGTGAATCAGGCTGACCATCTGCGGCAGGAAACGTTGCAGCAAATATCTCGAATACTGACAACCCGTCAGGCTGCTCGATGCTTGCTTGTGTTGGGGGAATATTTCCAACGCCTTAGAGCTTTGAGCTTACTATGGTCTAATCAACCTCGTGAACCTGCATAG 1191 0.4291 MNSPSAQFVSSRSMSVYDPIHQINMWGEGFKSNGNLGATIPLIDEADLKFDSQSEDASHVILGTPNKYDQEASKPAVDKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELEHARQQGLYVGGGLDSNNIGFAGPVNSGWFVIVSRSKFSSCAIILFAINSCTLRKNTKFSGITTFEMEYGIWVEEQNRQILELRTALNAHIGDMELRILVEGIMNHYSEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLLPLIEPLTEQQRLDLQNLGKSCQQAEDALSQGMDKLQQTLAESVAAGQLIEGSYIQQMGSAMEKLEALVCFVNQADHLRQETLQQISRILTTRQAARCLLVLGEYFQRLRALSLLWSNQPREPA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1609 396 Pfam Seed dormancy control 199 273 IPR025422 GO:0006351|GO:0043565
Lal17g1609 396 SMART brlzneu 75 146 IPR004827 GO:0003700|GO:0006355
Lal17g1609 396 PANTHER TRANSCRIPTION FACTOR TGA1 1 395 - -
Lal17g1609 396 Pfam bZIP transcription factor 78 112 IPR004827 GO:0003700|GO:0006355
Lal17g1609 396 CDD bZIP_HBP1b-like 79 131 - -
Lal17g1609 396 SUPERFAMILY Leucine zipper domain 79 120 IPR046347 GO:0003700|GO:0006355
Lal17g1609 396 PANTHER TRANSCRIPTION FACTOR TGA9 1 395 - -
Lal17g1609 396 ProSiteProfiles DOG1 domain profile. 181 391 IPR025422 GO:0006351|GO:0043565
Lal17g1609 396 Coils Coil 98 125 - -
Lal17g1609 396 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Lal17g1609 396 Gene3D - 78 127 - -
Lal17g1609 396 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 120 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1609 Lal-Chr17 17460949 17466932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1609 1 396 Calmodulin-binding Proteins AT5G10030 63.980 2.49e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal17g1609 DOG1 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1609 K14431 - gmx:100793353 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0776 7 14565200 14569626 Lal17g1609 17 17460949 17466932 PCT