Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1601 ATGTCTCCGGCAACCGGATTCCACGTCCCACTCTTGCCGGATTCCAATCCCGGGAAGAAACCGGCCACCGTCTCCGGCGCTGTGTTCAACATCGCCACAAGCATAATCGGTGCCGGAATCATGTCAATTCCAGCGATCCTGAAGGTTCTTGGTGTTATTCCAGCTTTCGCTATGATTCTGATTGTGGCTGTTTTGGCAGAAATATCGGTGGATTTTTTGATGAGGTTCACGAACTCCGTTGAAACGACGACGTATGCTGGCGTTATGAGAGAAGCGTTTGGACCCGTAGGTGCTTTAGCTGTACAAATTTGTGTTATTGTAACCAACACTGGTGGTTTAATTTTGTTTCTCATTATCATCGGGGATGTGCTATCTGGAAAACAAAATGGAGAGGAAGTGCACTTGGGCATTTTGCAACAATGGTTTGGATTTCACTGGTGGAATTCCCGGGAATTCGCTCTGCTGGTCACCTTGGTCGTTGTCATGCTTCCATTGAACTTGTATCGACGTGTAGAATCCTTGAAGTACAGTTCTGCTGTATCGACTGCTCTTGCTGTCTTATTTGTTAGCATATGTACTGGGTTGGGAATTGTTGCTCTGGTGCAAGGGAAAACACAAACTCCAAGATTGTTTCCCAAGTTAGACTACCAAACTTCTTTCTTTGATCTGTTCACTGCAGTTCCTGTTGTAGTGACAGCTTTCACATTTCATTTTAACGTGCATCCTATTGGGTTTGAGCTTGCCAAGCAATCCGATATGACGACAGCGGTTCGAATAGCATTGATGTTTTGTGCTATTCTCTACTTTACAATAGGTCTATTTGGGTACCTGTTGTTTGGGGATTCAACACAGTCAGACATTCTCATAAATTTTGACCAGAATGCTGGTTCTGTACTTGGTTCCTTGTTCAATAGTTTAGTCCGGGTAAGCTATGCACTCCACATCATGCTGGTGTTCCCTCTGGTGAACTTCTCTTTGAGAACAAACCTAGATGAACTTCTGTTCCACCAGAAACCTCTGCTAGCAACAGACAACAAAAGATTTGTGATCCTCACTTTGGTGCTGCTAGTCTTCTGTTACCTTGCTGCTATAGCAGTCCCAGATATTTGGTACTTCTTTCAGTTTGTGGGATCAACATCTGCAGTGTGCCTTGCCTTCATTTTCCCTGGCATGATTGTTTTAAGGAATGTTCGTGGTATATCATCATTAAGGGACAAAATTATTTCACTGAGTATGATTATACTTGCTGTACTAACAAGTGTGATTGCTATTTCCACCAACATATACAATGCTTTCAGTAGCAAGTCATAA 1311 0.4325 MSPATGFHVPLLPDSNPGKKPATVSGAVFNIATSIIGAGIMSIPAILKVLGVIPAFAMILIVAVLAEISVDFLMRFTNSVETTTYAGVMREAFGPVGALAVQICVIVTNTGGLILFLIIIGDVLSGKQNGEEVHLGILQQWFGFHWWNSREFALLVTLVVVMLPLNLYRRVESLKYSSAVSTALAVLFVSICTGLGIVALVQGKTQTPRLFPKLDYQTSFFDLFTAVPVVVTAFTFHFNVHPIGFELAKQSDMTTAVRIALMFCAILYFTIGLFGYLLFGDSTQSDILINFDQNAGSVLGSLFNSLVRVSYALHIMLVFPLVNFSLRTNLDELLFHQKPLLATDNKRFVILTLVLLVFCYLAAIAVPDIWYFFQFVGSTSAVCLAFIFPGMIVLRNVRGISSLRDKIISLSMIILAVLTSVIAISTNIYNAFSSKS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1601 436 Pfam Transmembrane amino acid transporter protein 22 423 IPR013057 -
Lal17g1601 436 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 3 434 - -
Lal17g1601 436 PANTHER AMINO ACID TRANSPORTER 3 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1601 Lal-Chr17 17399983 17403286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1601 1 430 Amino Acid or Auxin Permease AAAP Family AT3G56200 60.277 9.99e-179 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1601 - - gmx:100815694 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1601 17 17399983 17403286 Lal17g1601 17 17399983 17403286 ECH
Lal17g1601 17 17399983 17403286 Lal22g0201 22 1254422 1256920 PCT
Lal18g1401 18 16227102 16229749 Lal17g1601 17 17399983 17403286 PCT
Lal6g0212 6 1425535 1427970 Lal17g1601 17 17399983 17403286 PCT