Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1595 ATGGTTAGTTCCAAATACTTTTTCTATAATAACCCTTTTCATGCTTCTGATAACAACATAGAAAGATTGAAACTTTTCTTCTGTTTATGGATTCTTATGCTACTACCAACATGTGTGGAGCCAGGTTTAGGTGAAGATGATCATTGGGATGGAGTGGTTGTGACAGAATCAGACTTCTTAGCACTTCAAGGATTCAAGCAAGAGCTGGTTGATCCAAAAGGGTTCTTGAGAAGCTGGAATGATAGTGGTTATGGAGCTTGTTCTGGAAGTTGGATTGGTATCAAGTGTGCTATGGGACAAGTCATTGTAATTCAGCTTCCATGGAAAGGATTTAGTGGCCAAATCAGTGAAAGGATTGGTCAACTTCAAGAACTTAGAAAGCTTAGTCTTCATGATAACCAAATTAGTGGTTCAATCCCTTCAAGTTTAGGACTGCTTCCTAATCTTAGAGGAGTTCAACTATTCAATAATAAGCTTAGTGGTTCTATCCCTCCTTCATTAGGCTACTGTCCTTTGCTTCAGTCACTTGATCTTAGTAATAATTTGCTCACAGGAACAATCCCTGATAGTATTGCAAATTCCACTAGGCTTTATTGGCTTAACTTGAGCTTCAATTCGTTCTCAGGTCCAATACCAGCTACATTAACTCACTCAGTTTCTCTCACATTCCTTGACTTTCATCACAATAATCTCTCTGGTTCTATTCCTAACACGTGGGGTGGTGGTAGTGTTAAGAGTGGCTTCTTTAGGCTTCAAAGTTTGATCCTAGATCATAACTTATTCACTGGAAATATTCCTGCTTCTTTGGGAAGCTTAAGTGAACTCAAAGAGATTTCACTAAGCCATAATCAGTTTAGTGGAGCTATACCAAATGAAATAGGAACACTTTCTAGGCTTCAAATTTTAGATTTTTCTAGTAATGCCTTGAGTGGGAAGTTACCTAGTACTCTCTCTAATTTATCCTCACTCACACTATTAAATGTAGGGAACAACCACCTTAACAACCAAATTCAAGAAGCTTTAGGAAGATTACATTATCTTTCTGTTCTGATTTTGAGTAGAAACCAATTTAGTGGTCATATTCCTGCAAGTATTGGTAACATTTCCAATCTTATGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAATCTCCTTTGATACTCAACATAGTCTCAATATCTTCAATATTTCTTACAATAATCTCTCAGGTCCTGTTCCCACTCTACTTGCCAATAAATTCAACTCAACCTCATTTGTGGGAAATATTCAACTATGTGGCTATAGCCTTTCAACCCCATGTCCTTCACCAGCTCCATCATTCGGTGTCATTGCTTCGCCTCCTAAATTGTCACAGCAACACCATCGTAGGATACTAAGTACCAAAGACATAATTCTCATAGCAGCAGGAGCTCTCCTCATAGTCCTGATAACACTTTGTTGCATCCTGCTCATCTGCCTGATTAGAAAAAGAGCCACATCGAAGGCATCGAATGACCAGGTCAGTAGGAGGACAGGAAAAGGAGTCCCTCCTGTTGTTGGTGTCGGGGAAGTTGAAGAAGGTAGCGGCGAAGCCGGAGGGAAACTAGTCCATTTTGATGGACCATTGGCATTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTACATTGGAGGATGGAAGTCAAGTAGCAGTGAAGAGATTCAGAGAAAAAATCACTAAGAGTGAGAGGGAATTTGAATCAGAAGTTAGTGTTCTAGGGAAATTTAGACATCCAAATCTTTTGGCTCTTAGAGCTTTTTACTTGGGACCCAAAGGGGAAAAGCTTCTGGTTTTTGATTACATGCCTAAGGGAAGTCTTGCTTCTTTCCTACATGTTCGCGGATCTGAAACAGCTATTGATTGGGCAACAAGGATGAGAATAGCGCAGGGCGTGGCTCGCGGCATGTTTTACCTTCATTCGCAAGAAAACATCATACATGGGCACCTTACATCAAACAATATCTTGCTTGATGAGAATACAAATGCTAAAATTGCAGACTTTGGTCTTTCTAGATTAATGACAACTGCTGCTAATTCAAACATTATAGCTACTGCTGGAGCAGCATCGGGATATCGCGCACCGGAGCTACTAAAGCTTAAGAAAGCAAACAATAAAAGTGATATCTATAGTCTTGGTTTAATCTTATTGGAACTCCTTACTGGGAAGTCACCTAATGAGTCTATAAATGATGTTGAATTGCCTCAGTGGGTTGCTTCCGTTGTGAAAGAGGAGTGGACTAATGAGGTTTTCGATGTCGAACTGATGAAAGATGCATCAACAATTGGTGATGAATTGTTAAATACATTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCAAGACCAGATATTCAGCAAGTGCTTCAGCAGCTTCAAGAGATTAGACCAGTTCTTAGTTCTCAGGACAAAATTACATCATCAAGTACAATTTTTGCATAA 2517 0.3969 MVSSKYFFYNNPFHASDNNIERLKLFFCLWILMLLPTCVEPGLGEDDHWDGVVVTESDFLALQGFKQELVDPKGFLRSWNDSGYGACSGSWIGIKCAMGQVIVIQLPWKGFSGQISERIGQLQELRKLSLHDNQISGSIPSSLGLLPNLRGVQLFNNKLSGSIPPSLGYCPLLQSLDLSNNLLTGTIPDSIANSTRLYWLNLSFNSFSGPIPATLTHSVSLTFLDFHHNNLSGSIPNTWGGGSVKSGFFRLQSLILDHNLFTGNIPASLGSLSELKEISLSHNQFSGAIPNEIGTLSRLQILDFSSNALSGKLPSTLSNLSSLTLLNVGNNHLNNQIQEALGRLHYLSVLILSRNQFSGHIPASIGNISNLMQLDLSLNNLSGEIPISFDTQHSLNIFNISYNNLSGPVPTLLANKFNSTSFVGNIQLCGYSLSTPCPSPAPSFGVIASPPKLSQQHHRRILSTKDIILIAAGALLIVLITLCCILLICLIRKRATSKASNDQVSRRTGKGVPPVVGVGEVEEGSGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRFREKITKSEREFESEVSVLGKFRHPNLLALRAFYLGPKGEKLLVFDYMPKGSLASFLHVRGSETAIDWATRMRIAQGVARGMFYLHSQENIIHGHLTSNNILLDENTNAKIADFGLSRLMTTAANSNIIATAGAASGYRAPELLKLKKANNKSDIYSLGLILLELLTGKSPNESINDVELPQWVASVVKEEWTNEVFDVELMKDASTIGDELLNTLKLALHCVDPSPSARPDIQQVLQQLQEIRPVLSSQDKITSSSTIFA 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1595 838 PRINTS Leucine-rich repeat signature 173 186 - -
Lal17g1595 838 PRINTS Leucine-rich repeat signature 296 309 - -
Lal17g1595 838 Gene3D Ribonuclease Inhibitor 169 243 IPR032675 -
Lal17g1595 838 CDD STKc_IRAK 554 820 - -
Lal17g1595 838 Pfam Leucine rich repeat N-terminal domain 56 96 IPR013210 -
Lal17g1595 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 22 823 - -
Lal17g1595 838 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Lal17g1595 838 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Lal17g1595 838 Gene3D Ribonuclease Inhibitor 58 168 IPR032675 -
Lal17g1595 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 22 823 - -
Lal17g1595 838 Gene3D Ribonuclease Inhibitor 244 442 IPR032675 -
Lal17g1595 838 SUPERFAMILY Protein kinase-like (PK-like) 552 822 IPR011009 -
Lal17g1595 838 Gene3D Transferase(Phosphotransferase) domain 1 626 835 - -
Lal17g1595 838 Pfam Protein tyrosine and serine/threonine kinase 551 817 IPR001245 GO:0004672|GO:0006468
Lal17g1595 838 Gene3D Phosphorylase Kinase; domain 1 554 625 - -
Lal17g1595 838 ProSiteProfiles Protein kinase domain profile. 548 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1595 838 SMART LRR_typ_2 171 194 IPR003591 -
Lal17g1595 838 SMART LRR_typ_2 122 145 IPR003591 -
Lal17g1595 838 SMART LRR_typ_2 320 344 IPR003591 -
Lal17g1595 838 SMART LRR_typ_2 146 170 IPR003591 -
Lal17g1595 838 SMART LRR_typ_2 272 296 IPR003591 -
Lal17g1595 838 SUPERFAMILY L domain-like 87 433 - -
Lal17g1595 838 ProSiteProfiles Leucine-rich repeat profile. 124 146 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1595 Lal-Chr17 17334473 17337833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1595 49 822 Receptor kinase-like Gene Family AT3G51740 62.339 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal17g1595 PK_Tyr_Ser-Thr 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1595 - - aprc:113851294 1191.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1595 17 17334473 17337833 Lal17g1595 17 17334473 17337833 ECH
Lal17g1595 17 17334473 17337833 Lal18g1394 18 16204129 16207133 PCT
Lal17g1595 17 17334473 17337833 Lal6g0218 6 1447656 1451768 PCT
Lal18g1394 18 16204129 16207133 Lal17g1595 17 17334473 17337833 PCT
Lal6g0218 6 1447656 1451768 Lal17g1595 17 17334473 17337833 PCT