Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1581 ATGGTATCCATAGCTTCTAAACCTAACAATTCTATCTTTGTTTTGGCTATTCTTATTGCAAGCTTTTTCACTCCAAACTTCACATATGCCGATAAATCCAAGATAATGGGCATTGAAATGAATGCAATTGATAAATGTTGGAGATTAGATCCAGAATGGAGGAAACATCGGTCACAACTTGCTACATGTTCTGTTGGTTATGTTGGAAAGATGACAAATAACATTGGTGATGGTCTCATTCATTATAAAGTTACTGATCCTAGTGATGACCCAACAAACCCTAAACTTGGCACCTTAAGGTATGGAGCATCTGTGATTCAAGGGAAAGTTTGGATTACATTCGAAAGAGACATGCTTATTAAGCTAACGAAACCACTTCTAATTAGTAGTTTCACAACCATTGATGGTAGAGGTTTTGACATCCAAATTGCTCATAATGCATGCTTAATGATCTTTAAGACTACCAACATAATCATCCATAGCATTAAGATTCATGATTGCAAATCTCAAGTTCCTGGGAAGGTGGTTGGTCCTAATGGAAAGGTTATGTCTTTGGGTCAAGTAGATGGGGATGCGATCCGTTTGGTTAGTGCTTCAAAGATTTGGATCGACCATAATACACTTTCTAATTGTGAAGATGGTCTTCTTGATGTCACAAGGGGTTCCACTAATGTGACTATCTCTAATAACCGGTTCAAATTTCAAGACAAAGTTATGCTTCTTGGGCATGATGATGGATTTGTTAGAGACCAGAACATGAAGGTTACTGTTGTATACAACCATTTTGGACCTAATTGCAACCAGCGTATGCCTAGAATCCGTCATGGATATGCACATGTAGCAAATAATTTTTACTTGGGGTGGTTGCAATATGCTATCGGTGGAAGTACGACACCTAGCCTCAAAAGCGAAGCAAATCTATTCATAGCACCAACATCCGGGAATAAAGAGATAACATGGAGAAAAGACAATGATCAAAATCGGGATGGAGGAGAATTTCATTCAGTAAACGACGTTTTTGAGAATGGAGCATCTTTCATGGCAACAAAAGGTGGAAATGTGCGAAAACCAAATTATACTAAGGAACAAGCTTTTAAAGTTGCTGATGCTAAATATGTGAGATCATTGACAGGAACATCAGGTATTAATGATCTTGAACCAAATGAAATTGGCATGATCGATATATGA 1188 0.3763 MVSIASKPNNSIFVLAILIASFFTPNFTYADKSKIMGIEMNAIDKCWRLDPEWRKHRSQLATCSVGYVGKMTNNIGDGLIHYKVTDPSDDPTNPKLGTLRYGASVIQGKVWITFERDMLIKLTKPLLISSFTTIDGRGFDIQIAHNACLMIFKTTNIIIHSIKIHDCKSQVPGKVVGPNGKVMSLGQVDGDAIRLVSASKIWIDHNTLSNCEDGLLDVTRGSTNVTISNNRFKFQDKVMLLGHDDGFVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYLGWLQYAIGGSTTPSLKSEANLFIAPTSGNKEITWRKDNDQNRDGGEFHSVNDVFENGASFMATKGGNVRKPNYTKEQAFKVADAKYVRSLTGTSGINDLEPNEIGMIDI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1581 395 SUPERFAMILY Pectin lyase-like 81 378 IPR011050 -
Lal17g1581 395 Gene3D - 40 383 IPR012334 -
Lal17g1581 395 SMART amb_all 117 314 IPR002022 -
Lal17g1581 395 Pfam Pectate lyase 128 308 IPR002022 -
Lal17g1581 395 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Lal17g1581 395 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Lal17g1581 395 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Lal17g1581 395 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Lal17g1581 395 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Lal17g1581 395 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Lal17g1581 395 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Lal17g1581 395 PANTHER PECTATE LYASE 16 386 - -
Lal17g1581 395 PANTHER PECTATE LYASE 18-RELATED 16 386 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1581 Lal-Chr17 17250171 17252596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1581 71 318 Polysaccharide Lyase AT5G09280 68.548 7.79e-135 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1581 K01728 - gmx:100780437 590.882