Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1578 ATGGAAAATTACTATGATTCTGTCTGCCATATAGGGACTAACTTTGATGAATGCATTGATCATTCTCCCTTTTTAGTCCCTACACAAACACTACCTCATATCTCTAACTATGCCTCTCTTCAATTTGATCATTCACCCTTTGAAGGTGCTGCAAAAGATAAAACTATAAGTGCATCCAAAAGCCATAGTCAAGCCGAGAAACGACGAAGAGACCGGATTAATACACAGCTTGCAAGTCTCAGAAAATTGATTCCCAAGTCTGATAAGATGGACAAAGCAGCTTTACTAGGAAGTGTGATAGACCATGTCAAAGATCTAAAGCAAAAAGCAAATGATATTGTTAGTACTAGAGACTATATAGTTCCAACTGAATTTGATGAAGTAAAAATTGACTATGACCATGTTCAAGATGAAAAATTCAGCACTAAAGTAAACAAATTCAAGGACAATATCAACATAAAAGCTTCGGTTTGTTGCGACGATCGACCGGAACTTTTCTCGGAACTCATTCAAGTCCTCAAAGGGTTGAGACTAATAGCAGTTAAAGCTGATATAGCTAGTGTTGGTGGAAGGATTAAAAGCATACTAGTTCTTTGTTCTAAGGACAGTGAAGAGAGTGTTTGCATTAGTACTCTTAAACATTCCCTTAAATCAGCACTCACCAAAATTGCATCATCTTCTTCCATTGCATCAAATTATAGCACTAGAAGTAAGAGGCAGAGGTTTTTCTTTCCTTCTCATTGCTTATAG 750 0.368 MENYYDSVCHIGTNFDECIDHSPFLVPTQTLPHISNYASLQFDHSPFEGAAKDKTISASKSHSQAEKRRRDRINTQLASLRKLIPKSDKMDKAALLGSVIDHVKDLKQKANDIVSTRDYIVPTEFDEVKIDYDHVQDEKFSTKVNKFKDNINIKASVCCDDRPELFSELIQVLKGLRLIAVKADIASVGGRIKSILVLCSKDSEESVCISTLKHSLKSALTKIASSSSIASNYSTRSKRQRFFFPSHCL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1578 249 SMART finulus 63 112 IPR011598 GO:0046983
Lal17g1578 249 PANTHER TRANSCRIPTION FACTOR BHLH51 32 247 - -
Lal17g1578 249 CDD bHLH_AtAIG1_like 53 133 - -
Lal17g1578 249 CDD ACT_UUR-ACR-like 156 191 - -
Lal17g1578 249 Gene3D - 51 114 IPR036638 GO:0046983
Lal17g1578 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 106 IPR011598 GO:0046983
Lal17g1578 249 PANTHER TRANSCRIPTION FACTOR BHLH30 32 247 IPR045847 GO:0003700|GO:0006355
Lal17g1578 249 Pfam Helix-loop-helix DNA-binding domain 60 106 IPR011598 GO:0046983
Lal17g1578 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 115 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1578 Lal-Chr17 17234466 17235964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1578 1 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.667 1.87e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal17g1578 HLH 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1578 - - gmx:100799687 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1578 17 17234466 17235964 Lal17g1578 17 17234466 17235964 ECH
Lal17g1578 17 17234466 17235964 Lal18g1384 18 16146362 16148408 PCT
Lal18g1384 18 16146362 16148408 Lal17g1578 17 17234466 17235964 PCT