Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1557 ATGACGGAACAAACCAAGTTCAGCGTTCTGTGCAGTCTCTTCACATGGACACAGAGAACAAAGTCTTCGTTCAAGAAACGTTCCAAGTTTCGCAAATTCCTCGATTCCTTTTGCACCGATCGTAACTTTTTCCCCGCCATTCGCTTGATTCTCCCGAACCTTGATCGCGAACGAGGCACCTATGGCCTCAAGGAGCACGTGCTCGCCACGTGCCTTATTGATGCCCTTGCTATTTCTAAAGACTCCGACGACGCCGTTCGACTCATTAATTGGCGTAAAGGTGGCGCCAAAACCGGTTCCAATGTTGGTAATTTTGCCCTTGTTGCCACCGAGGTGCTGCAGCGTAGGCAAGGGACAGCTTCAGGTGGATTGACAATAAAGGAGCTGAATGACTTGCTTGATCAGTTGTCTTCGAGTGAAAACAGGGCTGAGAAGACTTTGGTATTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATCATCATGATAATCCTCAAAGATCTAAAGCTTGGATTTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTGACATGTGACTTAAAATTGGTTTGTGAAAAGCTGAGGGATCGGAACCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTACGCCCTCAATTGGCTAAGAGAGTTGCGAATGCAACTGAAGCATGGAAGAAGCTACATGGGAAGGAAGTGGTGGTTGAATGCAAATTTGATGGCGACCGCATTCAAATTCATAAAAATGGAACAGAGATGCACTACTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGCAATGTCAGAAATCATAACACAAAACATTATTGTTGATAGGTGCATACTTGATGGTGAAATGTTGGTCTGGGACACATTCTTAAATCGTTTTGCCGAGTTTGGCTCAAATCAGGAAATAGGCATTTATGCTGTATCCTTCTCAATGATCAGTTCAACCATTAATTCATGCTATAAAGAACTTCCTTGTGGTTTTGGTTTCAATGGAAGAATTAAGTGGCTAGATGTCGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCATCAAACTTTGAAGGAAAGGCATGAGATTCTCCGTAAAGTTTTGAGGCCAGTGAAGGGTCGATTGGAAATTTTAATACCTAATGATGGCCTCAATAGCCATCGTTCTGCTGGTGAACCACGTTGGTCATTTATTGCTCATAATGTGGATGAAGTGGAGAGATTTTTCAAAGAAACCATAGAGAATAGAGATGAGGGTATCGTTGTGAAAGACCTCAGTTCTAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAGTTGAAGCCTGAATATGTTCATCCTAGTTCTGATCTGGATGTACTTATCATAGGAGGCTACTATGGCTCTGGACGACATGGAGGAGAGGTTGCTCAATTTTTGGTTGGCCTTGCAGAACGTCCTTCCCCAAATACACATCCCAAGCGATTTGTCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAACTTGATGCTTTAGTTACCAAACTAAAACCTTATTTCAGAAAGTATGAACATCCCAAGAAAAGGCCACCAAGTTTTTATCAAGTTACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCAGAGAAATCAGTTATCCTTTCTATAACCAGTGATATCCGAACAATTGATTCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTCGGATTGACAGGGTGAGCAATGGCACCACACAGTGGCATACAGGATATGGCAAGGAGCAGGATAGTGAACCAAAAAAAATGAAATCCTCTACAAGGGGACAGAAGAAAATCATGTCCATTGTTCCATCTCATTTAGTTCAGACTGATGTTTCCAATATGGTTGCTGAAAATGGAGGAACTTTCTCGATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGGTTTAAATTCGAAGCAGCTAAACATCATGGTGATATAATTCATTGTTCTTGGGTATTAGCTTGCTATGCACAAAAGAAGCTCATTCCTCTTCAGCCAAAGTACTTCCTCTTCCTATCTGAGCAAACAAAGAACAAATTACAAGAAGAAATTGACCAGTTCTCAGACTCCTACTACTTGGATCTTTCTCTTAAAGACATGATACAGCTCTTGAGCAATATTCATAGGTCAGAAGATATCAGTACTATAGATCATTACAGGAAAAAATATTGCCCAAAGGATAAGTGGTGTTTCTTTTATGGATGCTCTATTTATTTCCACGCTGCAATACCATCATTGAAAGGAGATTGGGAAGATCTGTTGAGAATTTCTTCGAAAAGATTCAGGATGGAAATTCTCATGGGTGGTGGAAAAGTTACTGAAAATCTTACTTGTGCAACCCATTTAGTGGCTTTGTCAGTGCCAGGATATCATACTGACATTGAAGAAATACAGAGAAGTTTCACTTCAGTAGAGAGAAAATTTCTCCAGAGCAAGGGGTTAAATATAGTTAAATCCCAGTGGTTACAAGATTGTTTGGACCATAGCCGAAGATTACCAGAAGAAACTTATAGCTTGAAGCCCCCTGGAACAGAAGAATCGACAGATGAAGATAGTGAACCTGACGTGGCGCCAGAGGCTCATATAGGGGGAGATAATGTAACAGATGGAAATGTATCTGTCTCTGACAAGGGAGTTAAACAGAGAATTGTGAAGGCTGTTCATGATGAAGGTAAGGCCTTCATGTCCCAAGAGAAGGGTAGCCAAAGGAAAAGAGGAAGACCTCCAGGCAGAGGCAGTAAAAATGCAAAACCAGCTGGCAACCAAGCTCAAAGAGCACGAGCGCGAACTGTGAGAAAGCGTGCTAAAATATGTGAATATGAATCAGACGAAAGTGATTGTCATGACAAAAAACCATGTGAGGAGATTGACACTGCCAAAGGAAGTGTTGATTTTTACTGGAAACATTCAGAACCCCAAGAGAGTGAGAAGCATGCGAATGTTCAAGTTACTGAAACAAGAGAAAGTTGTGAGCGAAACAAGGAAGTTATGCATGAGGATTTGAAGGACAGTGAACCTGAAAGAATGTTTGTTCCGGAAATTGAAATGTCTGACAACAACAATGACCAAAGCAGTGAAGTGACTGACAAACTTGAAATATTGACTGATCCAGTGCAGTCAATGTTATTTGACATGATTCCTAGCCTTGCTACAAAGAAAGTTGAGGAATCTAAGATTCATAATTTTGGAGAAAAGAAGCCACCAGAAATCATCAATGCAGAGCCTTCAACTACACAGAAGAAGAAGAAAGTTAGCTATAAGGATGTTGTTAAGGACCTGCTCAAGGATGGTGCTATGAACAAAGTTGAGGATTTGTGA 3435 0.4087 MTEQTKFSVLCSLFTWTQRTKSSFKKRSKFRKFLDSFCTDRNFFPAIRLILPNLDRERGTYGLKEHVLATCLIDALAISKDSDDAVRLINWRKGGAKTGSNVGNFALVATEVLQRRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVFSTLIQKTNAQEMKWIIMIILKDLKLGFSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEMHYFSRNFLDHSEYAHAMSEIITQNIIVDRCILDGEMLVWDTFLNRFAEFGSNQEIGIYAVSFSMISSTINSCYKELPCGFGFNGRIKWLDVAFDILYFGDTSVIHQTLKERHEILRKVLRPVKGRLEILIPNDGLNSHRSAGEPRWSFIAHNVDEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYVHPSSDLDVLIIGGYYGSGRHGGEVAQFLVGLAERPSPNTHPKRFVSFCRVGTGLSDDELDALVTKLKPYFRKYEHPKKRPPSFYQVTNHSKERPDVWVDSPEKSVILSITSDIRTIDSEVFAAPYSLRFPRIDRVSNGTTQWHTGYGKEQDSEPKKMKSSTRGQKKIMSIVPSHLVQTDVSNMVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKHHGDIIHCSWVLACYAQKKLIPLQPKYFLFLSEQTKNKLQEEIDQFSDSYYLDLSLKDMIQLLSNIHRSEDISTIDHYRKKYCPKDKWCFFYGCSIYFHAAIPSLKGDWEDLLRISSKRFRMEILMGGGKVTENLTCATHLVALSVPGYHTDIEEIQRSFTSVERKFLQSKGLNIVKSQWLQDCLDHSRRLPEETYSLKPPGTEESTDEDSEPDVAPEAHIGGDNVTDGNVSVSDKGVKQRIVKAVHDEGKAFMSQEKGSQRKRGRPPGRGSKNAKPAGNQAQRARARTVRKRAKICEYESDESDCHDKKPCEEIDTAKGSVDFYWKHSEPQESEKHANVQVTETRESCERNKEVMHEDLKDSEPERMFVPEIEMSDNNNDQSSEVTDKLEILTDPVQSMLFDMIPSLATKKVEESKIHNFGEKKPPEIINAEPSTTQKKKKVSYKDVVKDLLKDGAMNKVEDL 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1557 1144 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lal17g1557 1144 MobiDBLite consensus disorder prediction 1009 1047 - -
Lal17g1557 1144 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Lal17g1557 1144 Gene3D - 466 617 IPR012340 -
Lal17g1557 1144 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lal17g1557 1144 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lal17g1557 1144 PANTHER DNA LIGASE 4 2 615 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Lal17g1557 1144 PANTHER DNA LIGASE 4 637 879 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Lal17g1557 1144 SUPERFAMILY BRCT domain 642 709 IPR036420 -
Lal17g1557 1144 Pfam twin BRCT domain 642 683 IPR001357 -
Lal17g1557 1144 ProSiteProfiles BRCT domain profile. 643 708 IPR001357 -
Lal17g1557 1144 MobiDBLite consensus disorder prediction 604 627 - -
Lal17g1557 1144 SUPERFAMILY Nucleic acid-binding proteins 469 599 IPR012340 -
Lal17g1557 1144 Gene3D DNA ligase/mRNA capping enzyme 220 462 - -
Lal17g1557 1144 Gene3D BRCT domain 766 878 IPR036420 -
Lal17g1557 1144 CDD Adenylation_DNA_ligase_IV 214 464 IPR044125 GO:0005524
Lal17g1557 1144 SMART BRCT_7 770 868 IPR001357 -
Lal17g1557 1144 SMART BRCT_7 624 698 IPR001357 -
Lal17g1557 1144 ProSiteProfiles ATP-dependent DNA ligase family profile. 359 497 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lal17g1557 1144 MobiDBLite consensus disorder prediction 872 969 - -
Lal17g1557 1144 Coils Coil 126 146 - -
Lal17g1557 1144 ProSiteProfiles BRCT domain profile. 771 878 IPR001357 -
Lal17g1557 1144 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lal17g1557 1144 CDD OBF_DNA_ligase_IV 469 599 - -
Lal17g1557 1144 MobiDBLite consensus disorder prediction 920 944 - -
Lal17g1557 1144 Gene3D BRCT domain 636 748 IPR036420 -
Lal17g1557 1144 Pfam ATP dependent DNA ligase C terminal region 485 599 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lal17g1557 1144 Pfam ATP dependent DNA ligase domain 226 460 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lal17g1557 1144 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 182 461 - -
Lal17g1557 1144 SUPERFAMILY BRCT domain 764 880 IPR036420 -
Lal17g1557 1144 ProSitePatterns ATP-dependent DNA ligase signature 2. 436 460 IPR016059 GO:0003909
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1557 214 599 Core DNA Replication Machinery Family AT1G08130 26.316 9.67e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1557 K10777 - gmx:100816002 1664.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1557 17 17012531 17029577 Lal17g1557 17 17012531 17029577 ECH