Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1554 ATGATGGGTAAAGAGGAAGTGAAAAATAGTGTGGTTCCTGAATCTGTTTTGAAAAAGCAGAAAAGGAATGATGAATGGGCTTTAACCAAAACACAGGAACTTGAAGCTGCCAAGAAAAATAGGGTTCTTTCACGCAATTTGATTTTCAACAGAGCCAAACTCTACGCTAAAGAATATCAAAATCAGGATAAGGAGCTGATTAGGTTGAAGCGCGAAGCCAAACTCAGGGGTGGGTTTTATGTTGATCCTGAACCTAAGCTCTTGTTCATCATCAGGATTCGTGGTATCAATGCTATGGACCCAAAGTCAAGGAAGATTTTGCAACTTCTGCGTTTGAGACGGATCTTCGGTGGTGTCTTTCTCAAAGTTAACAAAGCAACTGTGAATATGCTCCGCAGGGTTGAACCATATGTAACATATGGGTACCCAAATTTGAAGAGTGTCAGAGAACTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAACAGAGAATTGCTTTAACCGACAACTCCGTTATCGAACAGAGTTTGGGAAAGTATGGGATTGTTTGCATTGAAGATCTGATACATGAGATTCTCAGTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTTTCAAGCTGAAAGCTCCATTGGGTGGTTTGAAGAAGAAAAGGAATCATTATGTTGAAGGAGGTGATGCTGGCAACAGGGAAGTTTACATAAATGAGCTTATTAGAAGGATGAATTAG 741 0.4062 MMGKEEVKNSVVPESVLKKQKRNDEWALTKTQELEAAKKNRVLSRNLIFNRAKLYAKEYQNQDKELIRLKREAKLRGGFYVDPEPKLLFIIRIRGINAMDPKSRKILQLLRLRRIFGGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVRELIYKRGYGKVNKQRIALTDNSVIEQSLGKYGIVCIEDLIHEILSVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREVYINELIRRMN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1554 246 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Lal17g1554 246 Gene3D - 87 192 IPR036919 -
Lal17g1554 246 Gene3D - 194 246 IPR036919 -
Lal17g1554 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Lal17g1554 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Lal17g1554 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Lal17g1554 246 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 10 246 - -
Lal17g1554 246 Coils Coil 52 76 - -
Lal17g1554 246 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lal17g1554 246 PANTHER 60S RIBOSOMAL PROTEIN L7 10 246 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1554 Lal-Chr17 16981805 16984391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1554 10 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 80.591 1.15e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1554 K02937 - jre:109021767 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1554 17 16981805 16984391 Lal17g1554 17 16981805 16984391 ECH
Lal17g1554 17 16981805 16984391 Lal21g1222 21 15278464 15281892 LSH
Lal17g1554 17 16981805 16984391 Lal4g1557 4 19766056 19770960 LSH