Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1553 ATGAGTAACGGTTTCGTGAATGGTTCTTCACCTCGCCGCCGGCGACCGGAAAATGATATTGAAGCTGGCCGTGTGAGTAATCGCTCCGGTGACTTTGATGACGCCGATTTGGATGATCCATTTCGTATTACCAGAACTAAGAACGCTTCCGTTGAACGCCTTAGGCGTTGGAGACAAGCGGCTCTTGTGCTTAATGCTTCTCGTCGATTTCGTTACACTCTGGACTTGAAAAAAGAAGAGGAGAAGAAGCAAATTTTGAGAAAGATAAGAGCACATGCACAAGCCATCAGGGCAACATACCTGTTCAAAGCAGCAGCTGTGCCTGTGGGGCAAATGAATGAAACCCTAAAACCTCCTTCGACCTCCACTGGTGAATTTTCAATTGGACAAGAGCAACTTGCATCCATTTCAAGGGATCATGATACAACTGCTTTGCAACAATATGGAGGGGTTGCAGGGATATCAAATTTGTTGAAAACCGATTTAGACAAGGGTGTTCTTGATGACGACACTGAGTTACTGAAACGGAGAAACACATTTGGTTCTAACAATTATCCCCGAAAGAAGGGAAGAAATTTTCTGATGTTTTTGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATAGTAGCTGCTGCAGCCTCGTTGGCACTGGGGATAAAATCTGAGGGTATTAAGAAAGGATGGTATGACGGGGGAAGCATTGCTTTCGCAGTTATTCTTGTTATAGTTGTTACAGGGCCCTTGACACTCTTTCGTGCCTGTCTTTTTGTAGCTATAAGTGATTACAAGCAATCGCTTCAGTTTCAAGACCTAAATGAAGAGAAGAGAAATATCCACCTAGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCAATATATGATATTGTTGTTGGTGATGTTATACCACTTAATATTGGTAACCAGGTCCCTGCTGATGGAATCCTGATTACTGGTCACTCTCTTTCAATTGATGAATCAAGTATGACTGGTGAGAGCAAAATTGTCCATAAGGATTCTAAGAACCCATTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACCATGCTTGTAACCGGTGTTGGTATTAATACTGAGTGGGGGCTTCTCATGGCTAGCATTTCAGAAGACACTGGTGAAGAAACACCTTTGCAGGTCCGCCTAAATGGTGTAGCCACCTTCATTGGTATTGTTGGACTTTCTGTTGCTGCTATTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAAAAACCCAGATGGGAGTGTTCAATTTAAAGCAGGCAAGACTAAAGTTGGTGATGCTATTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACCATTGTAGTTGTTGCGGTTCCTGAAGGGCTTCCCTTAGCAGTGACCTTAACACTGGCCTACTCAATGAGAAAAATGATGGCCGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGCTCCGCCACAACCATTTGCAGTGATAAGACTGGCACATTGACCATGAATCAGATGACCGTGGTTGAGGCTTATGCTGGTGGGAAGAAGATTGATCCTCCTCACAACAAGTCAGAGCTATCTCCAATGCTTCACTCTTTGCTCATTGAAGGTGTTGCACAGAACACCAGCGGCAGTGTTTATGTACCTGAGGGTGGTAATGATGCTGAGGTTTCTGGATCTCCGACAGAAAAGGCAATTTTACATTGGGCACTAAAGCTTGGGATGAATTTTGTGGTAGCCAGATCAGAATCATCTATTATTCATGTCTTTCCTTTTAATTCAGAGAAAAAACGAGGTGGAGTTGCAATACAGACGACTAACTCTGACGTCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGCACAGCGTATGTTGATGCAAATGAGCAGTTGGTGGAGTTGGATGAGGAGAAGATGACATTTTACAAAAAAGCGATTGAAGACATGGCTGGTGATAGTCTACGTTGTGTTGCCATTGCGTATAGACCATATGAAAAGGAGAGTGTTCCAACTAGTGAAGAAGAACTTGCTCATTGGTCTTTACCAGAGGATAATCTTTCTTTACTTGCTATTGTTGGTCTTAAGGATCCCTGCCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGTCAAAAAGCTGGTGTTAAGGTAAAAATGGTGACTGGTGACAACGTCAAAACTGCAAAAGCTATTGCTGTGGAATGTGGAATACTTGCTTCAATAGCTGATGCCACTGAGCCAAACATCATTGAAGGGAAAACATTTCGTGCATTGTCAGATGCCCAGAGAGAAGAAATTGCTGAAGAGATATCGGTTATGGGACGATCATCTCCTAATGACAAGCTATTGCTTGTTCAAGCATTGAGGAGGAAGGGACATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATTCAAGGTACAGAAGTTGCCAAGGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGGCGGTCAGTATATGCTAATATTCAGAAATTTATCCAGTTTCAGCTTACTGTCAACGTGGCAGCTCTTATTATAAATGTTGTTGCTGCAGTTTCCTCTGGTGATGTCCCACTGAATGCAGTGCAGCTCCTCTGGGTAAACCTTATTATGGATACTTTGGGTGCACTAGCCTTGGCTACTGAACCACCAACTGATCACCTCATGGATCGTCCTCCAGTGGGTCGAAGAGAACCTCTCATAACAAATATCATGTGGAGAAATTTATTGCTACAGGCTATGTACCAAGTGTCTGTATTGCTTGTTCTCAATTTCCGAGGTGTGAGCATTCTTGGATTGGGTCATGAGAAGCATGACCATGCGATCAAAGTAAAAAACACCTTGATCTTCAATGCATTTGTTTTCTCTCAAGTCTTTAATGAATTTAATGCACGGAAGCCAGATGAGTTCAATATATTCAAAGGAGTCACTAAAAACTTTCTCTTTATGGGAATAGTGGGATTTACTGTTGTGCTTCAGATTATCATCATTGAATTTCTTGGCAAATTCACAACAACTGTCAGGCTTAATTGGCAGCAGTGGCTCATTTCTATCATCATTGGAGTGATCAGTTGGCCTCTTGCTGTGGTTGGAAAATTTATGCCGGTTCCAGCATCTCCCATTAATAACGTTTTTGGTCGAGGAAAAAGGAAGGACAGACCTGCGGCTTCATAA 3291 0.4306 MSNGFVNGSSPRRRRPENDIEAGRVSNRSGDFDDADLDDPFRITRTKNASVERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRATYLFKAAAVPVGQMNETLKPPSTSTGEFSIGQEQLASISRDHDTTALQQYGGVAGISNLLKTDLDKGVLDDDTELLKRRNTFGSNNYPRKKGRNFLMFLWDACKDLTLIILIVAAAASLALGIKSEGIKKGWYDGGSIAFAVILVIVVTGPLTLFRACLFVAISDYKQSLQFQDLNEEKRNIHLEVVRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLSIDESSMTGESKIVHKDSKNPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAAIVLIVLLARYFSGHTKNPDGSVQFKAGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGKKIDPPHNKSELSPMLHSLLIEGVAQNTSGSVYVPEGGNDAEVSGSPTEKAILHWALKLGMNFVVARSESSIIHVFPFNSEKKRGGVAIQTTNSDVHIHWKGAAEIVLACCTAYVDANEQLVELDEEKMTFYKKAIEDMAGDSLRCVAIAYRPYEKESVPTSEEELAHWSLPEDNLSLLAIVGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILASIADATEPNIIEGKTFRALSDAQREEIAEEISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRPPVGRREPLITNIMWRNLLLQAMYQVSVLLVLNFRGVSILGLGHEKHDHAIKVKNTLIFNAFVFSQVFNEFNARKPDEFNIFKGVTKNFLFMGIVGFTVVLQIIIIEFLGKFTTTVRLNWQQWLISIIIGVISWPLAVVGKFMPVPASPINNVFGRGKRKDRPAAS 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1553 1096 Gene3D - 513 711 IPR023299 GO:0000166
Lal17g1553 1096 Pfam haloacid dehalogenase-like hydrolase 500 825 - -
Lal17g1553 1096 PRINTS P-type cation-transporting ATPase superfamily signature 327 341 - -
Lal17g1553 1096 PRINTS P-type cation-transporting ATPase superfamily signature 503 517 - -
Lal17g1553 1096 PRINTS P-type cation-transporting ATPase superfamily signature 704 715 - -
Lal17g1553 1096 PRINTS P-type cation-transporting ATPase superfamily signature 726 736 - -
Lal17g1553 1096 PRINTS P-type cation-transporting ATPase superfamily signature 811 830 - -
Lal17g1553 1096 PRINTS P-type cation-transporting ATPase superfamily signature 835 847 - -
Lal17g1553 1096 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 777 891 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g1553 1096 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 444 526 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g1553 1096 Gene3D - 500 856 IPR023214 -
Lal17g1553 1096 CDD P-type_ATPase_Ca_PMCA-like 173 944 - -
Lal17g1553 1096 Gene3D - 49 104 - -
Lal17g1553 1096 SUPERFAMILY Calcium ATPase, transduction domain A 281 376 IPR008250 -
Lal17g1553 1096 MobiDBLite consensus disorder prediction 1 31 - -
Lal17g1553 1096 ProSitePatterns E1-E2 ATPases phosphorylation site. 505 511 IPR018303 -
Lal17g1553 1096 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1088 - -
Lal17g1553 1096 Pfam Ca2+-ATPase N terminal autoinhibitory domain 37 81 IPR024750 GO:0005516
Lal17g1553 1096 Gene3D - 199 1065 - -
Lal17g1553 1096 Pfam E1-E2 ATPase 281 481 - -
Lal17g1553 1096 SFLD p-type atpase 485 863 IPR044492 -
Lal17g1553 1096 SFLD Haloacid Dehalogenase 485 863 - -
Lal17g1553 1096 SMART Cation_ATPase_N_a_2 147 221 IPR004014 -
Lal17g1553 1096 PANTHER CATION TRANSPORTING ATPASE 27 1088 - -
Lal17g1553 1096 MobiDBLite consensus disorder prediction 12 31 - -
Lal17g1553 1096 Pfam Cation transporting ATPase, C-terminus 896 1071 IPR006068 -
Lal17g1553 1096 SUPERFAMILY HAD-like 501 916 IPR036412 -
Lal17g1553 1096 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 140 1075 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lal17g1553 1096 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 510 708 IPR023299 GO:0000166
Lal17g1553 1096 Gene3D - 171 379 - -
Lal17g1553 1096 Pfam Cation transporter/ATPase, N-terminus 149 216 IPR004014 -
Lal17g1553 1096 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 1075 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1553 Lal-Chr17 16956083 16976807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1553 9 1082 Primary Pumps ATPases AT5G57110 73.116 0.0 1593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1553 K01537 - gmx:100792945 1785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1553 17 16956083 16976807 Lal17g1553 17 16956083 16976807 ECH
Lal17g1553 17 16956083 16976807 Lal21g1221 21 15252353 15276700 LSH