Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1550 ATGGAAGATGATAAGGCATGTACCCTTTGTCTAAGTCTTGAAATGGGAATTAGTGGAGGGTATGTGCCAAAAAAGGATAAGCAGAAAGTGCATAAATCTGTGCCTTGTCTTGACCTATCATTTGACCTTTATCCAAAAGAAGAAGCTATTGATGTGAATCATGATGATGAGGCAAAAGGGTTGAATTTGAAGAGAAATATCATTGAAGAAGAAGAACAACAAGATCCAAATTCAATGATTACTGATAATGGTAGCAGAAAGAAATTGAGGCTCACAAAGGAACAATCAGCTTTACTTGAAGATAGCTTCAATTTTCATATCACTCTTAGCCCAGCTCAGAAACAAGCACTTGCTGACAAATTGAACTTAAGGCATAGACAAGTTGAGGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAAGAGTGGTGGATTGTGAGTTCTTAAAGAAATGCTATGAAAAACTAACCAATGAGAACCTTAGATTGAAGAAGGAATTGCAAGAGCTACGTTCTCTAAAAGTTAATATCTCTAAGATTGCAACCTTCACTACATGTTCATCTTGCAAGGAACTAATGAACTCCAATGAAGGAAACATTGAATTAGAGAGTATTAGGAGTTAG 630 0.3651 MEDDKACTLCLSLEMGISGGYVPKKDKQKVHKSVPCLDLSFDLYPKEEAIDVNHDDEAKGLNLKRNIIEEEEQQDPNSMITDNGSRKKLRLTKEQSALLEDSFNFHITLSPAQKQALADKLNLRHRQVEVWFQNRRARTKLKQRVVDCEFLKKCYEKLTNENLRLKKELQELRSLKVNISKIATFTTCSSCKELMNSNEGNIELESIRS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1550 209 PANTHER - 66 196 - -
Lal17g1550 209 CDD homeodomain 86 143 IPR001356 GO:0003677
Lal17g1550 209 Coils Coil 148 178 - -
Lal17g1550 209 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Lal17g1550 209 Pfam Homeodomain 86 140 IPR001356 GO:0003677
Lal17g1550 209 Gene3D - 79 146 - -
Lal17g1550 209 SMART HOX_1 84 146 IPR001356 GO:0003677
Lal17g1550 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 66 196 - -
Lal17g1550 209 SMART halz 142 185 IPR003106 GO:0006355|GO:0043565
Lal17g1550 209 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Lal17g1550 209 SUPERFAMILY Homeodomain-like 75 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1550 Lal-Chr17 16902530 16904278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1550 85 194 Homeobox Transcription Factor Family AT4G37790 67.826 4.47e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal17g1550 Homeodomain 8.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1550 K09338 - gmx:100778922 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1550 17 16902530 16904278 Lal4g1552 4 19728752 19729954 LSH
Lal7g1086 7 16854945 16856203 Lal17g1550 17 16902530 16904278 PCT
Lal17g1550 17 16902530 16904278 Lal7g1086 7 16854945 16856203 PCT