Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1548 ATGATTCCTACTAATCATTATTCAGTATCCTCTTCTATGCCTTTACATCTTGATGAAGATCAAAGCTACCAGCTTTTTAGTACAAACTATGAAGCTTCTTCTGCAACTTCTTCTGATCTATTATACCATCAAGCCTCTTCTTCAAATTCTTCTCTATTAAATCCTAAACTCTTGCAACCTGGACAAGGATCTTACCACCAGGAACCAAATCACTTAGGAAGTGATGAAGAGGCTGAGAAGATTATTCCTTCTAGTGGATCATGGGATCATCTTGGAGTTGAAAGCAGAAGTAAACTCAAGGTGAAAGTAGTTTGGAAGAAAGAAGAAGGGAATGAAAATGTTGAAGCTGAAGATGGTTCAGTGAAGTGGATGTCTCCAAAGATGAGAATAATGCATAGAATGGCGGTTTCAGATCAAACTGGTTCTGATATAGAAGCCCTCTCCAAGCAGAAGTTTGAACTACAAAAGCAACAGTTATCACTTATTGGAAATGATAATAGCACCAATTCTTCAACCCATAGCAATACCACTGTTAGGTTTTGTTCTTCAAACTTCAAGCACATGTTTGAAGAACAAAAGCAACCGTTTTCACTTCTAGGAACTTCTGATAATAGTGGCAGCAACAACTCTTCAAACAACAATAACATCACTGTTAGGGTTTGTTCTGATTGCCACACTACAAAGACCCCTCTATGGAGGAGTGGACCAAGAGGTCCAAAGACACTTTGTAATGCTTGTGGGATTCGACAAAGGAAGGCGAGACGTGCCATGGCCGCGGCTGCAGCTTCAGCTGCAGCATCGGCCGATGGCACAATTCTCACGGCTGAGCCGACTCATGTGAAAGGAAAGAACTTACAAGGCAAAGAGAAGAAATCAAAAATTAAGCTAACACCACAGAAGAAAAAGAAGTCCAAACTTGGTTGTAAGCCATGTATAGGTAGAAAGAAGTTTAGTTTTGAGGATTTGGCAATAAGTTTGAGTAAGAATTTGGCACTTCAACAAGTTTTCCCACAGGATGAGAAAGAAGCTGCAATTATGCTCATGGCTTTATCCTATGGCTTACTTCATGGCTTTCCCTCAGATCGTTACTTAGATTAA 1098 0.3998 MIPTNHYSVSSSMPLHLDEDQSYQLFSTNYEASSATSSDLLYHQASSSNSSLLNPKLLQPGQGSYHQEPNHLGSDEEAEKIIPSSGSWDHLGVESRSKLKVKVVWKKEEGNENVEAEDGSVKWMSPKMRIMHRMAVSDQTGSDIEALSKQKFELQKQQLSLIGNDNSTNSSTHSNTTVRFCSSNFKHMFEEQKQPFSLLGTSDNSGSNNSSNNNNITVRVCSDCHTTKTPLWRSGPRGPKTLCNACGIRQRKARRAMAAAAASAAASADGTILTAEPTHVKGKNLQGKEKKSKIKLTPQKKKKSKLGCKPCIGRKKFSFEDLAISLSKNLALQQVFPQDEKEAAIMLMALSYGLLHGFPSDRYLD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1548 365 MobiDBLite consensus disorder prediction 52 73 - -
Lal17g1548 365 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
Lal17g1548 365 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 182 - -
Lal17g1548 365 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 185 357 - -
Lal17g1548 365 MobiDBLite consensus disorder prediction 52 69 - -
Lal17g1548 365 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 185 357 - -
Lal17g1548 365 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 182 - -
Lal17g1548 365 Gene3D - 217 307 IPR013088 GO:0006355|GO:0008270
Lal17g1548 365 SMART GATA_3 215 266 IPR000679 GO:0006355|GO:0043565
Lal17g1548 365 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 255 - -
Lal17g1548 365 CDD ZnF_GATA 220 252 IPR000679 GO:0006355|GO:0043565
Lal17g1548 365 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Lal17g1548 365 ProSiteProfiles GATA-type zinc finger domain profile. 219 251 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1548 Lal-Chr17 16886106 16888283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1548 202 357 C2C2-Gata Transcription Factor Family AT4G26150 45.355 2.74e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal17g1548 GATA 6.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1548 - - lang:109328146 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1548 17 16886106 16888283 Lal17g1548 17 16886106 16888283 ECH
Lal14g1680 14 17006227 17008252 Lal17g1548 17 16886106 16888283 PCT
Lal7g1080 7 16817856 16819815 Lal17g1548 17 16886106 16888283 PCT
Lal17g1548 17 16886106 16888283 Lal14g1680 14 17006227 17008252 PCT
Lal17g1548 17 16886106 16888283 Lal7g1080 7 16817856 16819815 PCT