Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1527 ATGCACCCTATGGAAGGTGTCTTCTCCCTTCCTGAAGCCGCCAGAACTGACTTTCTCCATTCTCTAGTGCAGTATTTGGGCTGCACTTACATTTGTCTATGGTCATCTGATCCTATTTCAACCAATTGTTTGATTTTCTTGGATGGTTTATTCAACCAACCAAGTACTTCTTTGGGGAGTGTAGCTCAAGAGCTTCTAAACAAGTACCAGAGTTTAACATTTGATATCAATAATGACTGTGTTCCTGGATTAGCTTTTAAGAACCAACGCCCTTATCTATTGCTGCAACGATTGGATCTTCTGAGATTGGCATCCACAGAAATCCAAACACAATTCTTTCAGGAAGCAAGGATTAAGACAGCTATTTTTATGGGGTGTAACAAAGGGGAAATTGAGCTTGGCTTCTCAAATATGTCTCAAGATGAAATTCAAACAGCACTTAGGAGTTTGTTTCCATCAGAATTTTCTAGACAAATCCAACCAATAGATCCAAATCCACCATCTTCATCTTCATCTTCATTGAGATCATTATCCAAAGGTAGCCCTGAATATTCATCTTTGATATTCACTACTCCTGAAACTCTTAGAGGAATAATTCCTACAATATTGCCACCTTTGGATAATGAACATCAACAAGCCATTCAAGTTACTCCAAGTCACCAATTCCATGCACAAGATAATGAACAAGATGAAATAATGAGAACAATCCTATATATTTTAACTTCATCACCTTCTTCTTATTCTTCTACTACTTCAACTTTTCATCATCAAAACTTGCCTTATAATAGTGCTTTCAAGAGGTATAGACCAAATTTAGGATCTAATATAAAAATGTCACAAATGGGGTCCAATTTCCAGAGACAAAACATACTGAATAGGTCATTTGAATTCTTTAGAAAATTAAATTTGTCAAGAATTAGAGAACATATTCAAGCTACCCAAACTACTAGTACACAGCTACATCACATGATATCAGAGAGAAGAAGGCGTGAGAAACTGAATGAGAATTTTCAAGCACTTAGAACATTACTTCCTCTTGGAACTAAGAAAGACAAAGCTTCAATACTAACATCAGCAAAGGAGACATTGAAATCTTTGATGGCTGAAATTGAAAAGCTAAGCAAAAGAAATCAAGAGTTGGTGTCACTATTAGCAACAAAAGAATGTAACATTGAAAAAACCAAAACTAGCTTCTCATCAAATGAAAAATGGAATGTTCAAGTCTCATATGTACCACAATCAAGTTCATCACAAGAGAGAATGGTAGATTTGCAAGTGAATTTGAGAGGACAAGTTTCTCAAGTTGATATATTGATTCGATTATTGGAATTCTTAAAGCAAGTTCAAAATGTGAGTTTCATTTCTATGGGTGCAACACAAGGGAATGATCTTCATCAATTAACTTTCAGACTAAGGATTATTGAGAAAAGTGAATGGGACGAGTCTACCTTCGAGGAAGCAATAAGAAGAGTGGTTACTGATTTGTTACAGTGGCAAAGAGACAAATAA 1509 0.3552 MHPMEGVFSLPEAARTDFLHSLVQYLGCTYICLWSSDPISTNCLIFLDGLFNQPSTSLGSVAQELLNKYQSLTFDINNDCVPGLAFKNQRPYLLLQRLDLLRLASTEIQTQFFQEARIKTAIFMGCNKGEIELGFSNMSQDEIQTALRSLFPSEFSRQIQPIDPNPPSSSSSSLRSLSKGSPEYSSLIFTTPETLRGIIPTILPPLDNEHQQAIQVTPSHQFHAQDNEQDEIMRTILYILTSSPSSYSSTTSTFHHQNLPYNSAFKRYRPNLGSNIKMSQMGSNFQRQNILNRSFEFFRKLNLSRIREHIQATQTTSTQLHHMISERRRREKLNENFQALRTLLPLGTKKDKASILTSAKETLKSLMAEIEKLSKRNQELVSLLATKECNIEKTKTSFSSNEKWNVQVSYVPQSSSSQERMVDLQVNLRGQVSQVDILIRLLEFLKQVQNVSFISMGATQGNDLHQLTFRLRIIEKSEWDESTFEEAIRRVVTDLLQWQRDK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1527 502 Gene3D - 315 391 IPR036638 GO:0046983
Lal17g1527 502 SMART finulus 323 372 IPR011598 GO:0046983
Lal17g1527 502 MobiDBLite consensus disorder prediction 158 178 - -
Lal17g1527 502 Pfam Helix-loop-helix DNA-binding domain 321 366 IPR011598 GO:0046983
Lal17g1527 502 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 495 - -
Lal17g1527 502 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 495 IPR044658 -
Lal17g1527 502 CDD bHLH_AtbHLH_like 322 374 IPR045239 -
Lal17g1527 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 381 IPR036638 GO:0046983
Lal17g1527 502 Coils Coil 356 390 - -
Lal17g1527 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1527 Lal-Chr17 16611519 16617198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1527 15 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.826 7.11e-93 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal17g1527 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1527 - - gmx:100807098 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1527 17 16611519 16617198 Lal17g1527 17 16611519 16617198 ECH
Lal17g1527 17 16611519 16617198 Lal4g1542 4 19546226 19550850 LSH