Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1523 ATGAAGAAGCATGGAATAACGGAAGAAGAAGGTGTTGGTGAAAACAGTAATAAGTCACAGTTTCTGGTGAAAACGTTTGAGATAGTGGACAACCCAGAAACCAATGCAATTGTATCATGGAATGAAACGCGGGATAGCTTTGTCGTTTGGGATGTTCAATCATTCTCTCAAAACATTCTTCCCAACTATTTCAGACATTGCAATTTTTTAAGCTTCATTCGCCAGCTTCATTTCTATGGTTTTAGGAAGGTTAATTCAGAGCGTTATGAGTTTGCAAATGAAGGGTTTAAGGGAGGGATGAAGCATTTGATGAAGAACATAACATCTAAACGCTCCAAGTTTAAGAAACTTCATCAAGGCTCTTCCAATGTAATAAATCCTAGTCTGAAGGATGAAGTTGAGCAGCTGAAGAAAGATAATGACTTTTTGAAAGTGGAAATTGTGAAACTAAGACAGAACAATGAGAATTTAGATGCTGAAATCAGTAAGATCGAGGAGCGAATTCGTCGCGCCGATTTGAATCGGAATCAGATTATGCATTTCATTGCTGGAATGGATAAAATGAAGACATTGGTTGATATGTTGAAGCATAAGGGACAGGAAAAAGAGGAGCATGATAAGGTAGGAACACAAAGCCAAAATGTTGAACATAGACAACATGGTACTGAACAATTGTTTTCATTGCAATCTGAGTTCATTGAACAAATGTCTGGGATTTTGAAAACTAACAATGTTGTAAACCAAGTTGCTTCACCTATTGGTTCTAGTGAAAGTTTGCATGAAGAATCCTTTGATTTTGAGGATATGTTGAAAAAACTACTGGGACATAGTTCTGGTGCTGATGAGAAAGTACATGCAAAAAACTCATGTATTGATATTGAGTTAGAGGTATTCTTGGGTAAGTCTACTGATTGGACCGGATTCGGAGGCGAAATTGGTAAGGGAAAGTAG 951 0.3733 MKKHGITEEEGVGENSNKSQFLVKTFEIVDNPETNAIVSWNETRDSFVVWDVQSFSQNILPNYFRHCNFLSFIRQLHFYGFRKVNSERYEFANEGFKGGMKHLMKNITSKRSKFKKLHQGSSNVINPSLKDEVEQLKKDNDFLKVEIVKLRQNNENLDAEISKIEERIRRADLNRNQIMHFIAGMDKMKTLVDMLKHKGQEKEEHDKVGTQSQNVEHRQHGTEQLFSLQSEFIEQMSGILKTNNVVNQVASPIGSSESLHEESFDFEDMLKKLLGHSSGADEKVHAKNSCIDIELEVFLGKSTDWTGFGGEIGKGK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1523 316 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 283 IPR027725 -
Lal17g1523 316 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g1523 316 Gene3D - 13 111 IPR036388 -
Lal17g1523 316 SUPERFAMILY "Winged helix" DNA-binding domain 17 108 IPR036390 -
Lal17g1523 316 Pfam HSF-type DNA-binding 21 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g1523 316 Coils Coil 126 174 - -
Lal17g1523 316 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 9 283 - -
Lal17g1523 316 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g1523 316 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal17g1523 316 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1523 Lal-Chr17 16588327 16591170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1523 10 183 HSF AT2G26150 43.333 3.11e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal17g1523 HSF_DNA-bind 3.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1523 K09419 - gmx:100818430 238.81