Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1512 ATGAAGGAAATATTTCCCATTGTTGCAGTTCCAATTGCAGTTGGAAATTTAATCCAAAAGGATATGACAAATACAATAGAAGCTTTAATACTAAATCCTGAAATTGAGGAGTGTAAGTCTTACTCTCTTGTAACTGAAAATCACACAGATATTATTAGTTCACAGTGCCAAAATACAGTATCTGATCTTGTCTCAGAAATGGTATTAAAGGAACCTGCTACTTTGAGGACTAATTGTGATGAAATAGGTTCGCCGATCGGCGTCAAGGGTGATGATAATATCCATGGAAGTGGATCAGATGGTTGTGATAAAAAACTAAGTGTTGAGCCTCCAGAGAAGAAACCTTGCAGAACAAGCTACCAGAATGCCTTGGGATTGAGTGGTGATTACCCTCTTTATGGTTTCTCATCTGTTTGTGGAAGAAGACAGGAAATGGAAGATGCTATTGCTGTTAAGCCTCAACTTTTTCAAGTCCCTTCACAGATGCTAATGGATGATCATGTCGATGGAAATACAAAATATTCTTCGGCCCACTTTTTCGGCGTCTACGATGGACATGGGGGCTTTGAGGTTGCTAGTTACTGCCAGGAACATCTTCATTCAGTGTTGATTAAGGAAATAGAAGCTTTAGAAGCAAGGTTGGCTGAAAAGAATGAGAGAGGCAATTGGCAGGAACATTGGAAAAAAGCATTCTCCAATTGTTTTCATAAAGTAGATGATGAAGTTGTAGGAGTTCATGAAGCTAATAGTGGAAGCAACAATGATAATGAATCTGAATGTAGTATTGAATCTCTTGCTACTGAGACTGTTGGCTCTACTGCAGTGGTTGCTGTTTTAACTCAAAGGCACATAATAGTTGCAAACTGTGGCGATTCGAGAGCAGTTATGTGTCGCGGAAAAGAAGCACTGCCATTGTCTGATGACCACAAACCAGATAGAGAGGATGAGTGGACAAGGATAGAAGCTTCAGGAGGAAAGATCATACAGTGGAATGGATACAGAATTCTTGGTGTTTTAGCAGTGTCAAGGTCAATAGGTGATAAATACTTGAAACCATGGATAATTCCAGAACCAGAAGTCGTGTTTGTCCATCGTAAAAAAGACGATGAATGCCTTATTCTAGCAAGTGATGGTTTATGGGATATGATGACAAATGAAGAAGCCTGTGACATTGCACGAAAGCGAATCCTAATTTGGCACAAGAAGAATGATAACAATGTATCGATCGGACAAAGCCATGGAGTCGATCCGGCAGCTCAGTATGCTGCAGAGTATCTATCCAGACTTGCACTCCAAAGAGGAAGCAAAGATAATATCTCTGTCATTGTTATAGACTTGAAGACTCAAAGAAAATTTAAGACAAAAGCTTAA 1371 0.3946 MKEIFPIVAVPIAVGNLIQKDMTNTIEALILNPEIEECKSYSLVTENHTDIISSQCQNTVSDLVSEMVLKEPATLRTNCDEIGSPIGVKGDDNIHGSGSDGCDKKLSVEPPEKKPCRTSYQNALGLSGDYPLYGFSSVCGRRQEMEDAIAVKPQLFQVPSQMLMDDHVDGNTKYSSAHFFGVYDGHGGFEVASYCQEHLHSVLIKEIEALEARLAEKNERGNWQEHWKKAFSNCFHKVDDEVVGVHEANSGSNNDNESECSIESLATETVGSTAVVAVLTQRHIIVANCGDSRAVMCRGKEALPLSDDHKPDREDEWTRIEASGGKIIQWNGYRILGVLAVSRSIGDKYLKPWIIPEPEVVFVHRKKDDECLILASDGLWDMMTNEEACDIARKRILIWHKKNDNNVSIGQSHGVDPAAQYAAEYLSRLALQRGSKDNISVIVIDLKTQRKFKTKA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1512 456 Pfam Protein phosphatase 2C 133 439 IPR001932 -
Lal17g1512 456 Coils Coil 200 220 - -
Lal17g1512 456 Gene3D - 123 456 IPR036457 -
Lal17g1512 456 ProSitePatterns PPM-type phosphatase domain signature. 179 187 IPR000222 GO:0043169
Lal17g1512 456 SUPERFAMILY PP2C-like 130 447 IPR036457 -
Lal17g1512 456 PANTHER ALPHABET, ISOFORM E-RELATED 92 455 - -
Lal17g1512 456 ProSiteProfiles PPM-type phosphatase domain profile. 132 446 IPR001932 -
Lal17g1512 456 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 92 455 - -
Lal17g1512 456 SMART PP2C_4 122 444 IPR001932 -
Lal17g1512 456 CDD PP2Cc 133 446 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1512 Lal-Chr17 16490932 16496949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1512 131 456 PP2C-type Phosphatase Gene Family AT1G17550 56.839 1.45e-133 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1512 K14497 - gmx:100812974 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1512 17 16490932 16496949 Lal17g1512 17 16490932 16496949 ECH
Lal17g1512 17 16490932 16496949 Lal4g1537 4 19485349 19489385 LSH
Lal14g1667 14 16901456 16904881 Lal17g1512 17 16490932 16496949 PCT
Lal17g1512 17 16490932 16496949 Lal14g1667 14 16901456 16904881 PCT