Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1511 ATGAAGAAAAGATGCTTAGAACGCAGTCTTAAACTCACTCTTCCTGCATCTGATGAAGCTTCTTTTGCAAAGTTCATGAATGAAAGTGGAACATTTAAAGATGGGAACTTGCTTGTGAATAAGGATGGAGTTAGAGTTGTGTCTCACAGTGAAGTAGAAGTTGCACCCCCAATAAGGGCACTAGATAACCAGTTAAGTGTGGCAGACATTGACACAATCAAAGTAATTGGAAAGGGAAACGGAGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAGTTTTTTGCATTAAAGGAAATTCAAGTGAATATTGAGGAGCCTATGTGCAAGCAAATAGGACAAGAACTAAAAATTAACAAATCAGCACAGTGTCCTTATGTTGTTGTCTGTTATCAATCTTTCTATGTTAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGATCCTTGGAAGATCTTCTTAACAAAGTTCAAACAATTCCGGAGCCATATCTAGCTGCCATCTGTAAGCAGGTGGTGAAGGGTTTAATATATCTTCATCATGAAAAGCATATTATCCACAGGGACCTAAAACCTTCTAATTTGCTTATAAATCATAGAGGAGAAGTGAAGATTACTGACTTCGGTGTTAGTGCAATCATGGACACTACTTCTGGTCAAGCAAATACTTTCATTGGAACATACACCTATATGTCTCCAGAGAGAATCAATGGAAGCCAGCATGGCTACAACTATAAAAGTGATATATGGAGTTTAGGACTGATATTGCTCAAATGCGCTACCGGGCGGTTTCCGTATGCACCACCGGATCAAAAGGAAGGATGGGATAACATTTTTCAGCTAATGGAGGCTATAGTTGAGAAACCTCCACCTAGTGCTCCATCTGATCAATTTTCTCCAGAATTTTGCTCATTTATCTCATCATGTTTACAGATAAATCCAAGGGATAGACTATCAGCTCAGGACCTTGTGACACATCCTTTTATCAACAAATATGAGGATTTGCATGTGGATCTTTCAGCTTACTTCTCCAATGCCGGGTCTCCACTAGCAGCCATATAA 1071 0.3922 MKKRCLERSLKLTLPASDEASFAKFMNESGTFKDGNLLVNKDGVRVVSHSEVEVAPPIRALDNQLSVADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIQVNIEEPMCKQIGQELKINKSAQCPYVVVCYQSFYVNGVISIILEYMDGGSLEDLLNKVQTIPEPYLAAICKQVVKGLIYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMDTTSGQANTFIGTYTYMSPERINGSQHGYNYKSDIWSLGLILLKCATGRFPYAPPDQKEGWDNIFQLMEAIVEKPPPSAPSDQFSPEFCSFISSCLQINPRDRLSAQDLVTHPFINKYEDLHVDLSAYFSNAGSPLAAI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1511 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lal17g1511 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
Lal17g1511 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1511 356 PANTHER MAP KINASE KINASE 1 356 - -
Lal17g1511 356 CDD PKc_MAPKK_plant_like 68 336 - -
Lal17g1511 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
Lal17g1511 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Lal17g1511 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lal17g1511 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1511 356 SUPERFAMILY Protein kinase-like (PK-like) 68 339 IPR011009 -
Lal17g1511 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1511 Lal-Chr17 16487368 16494601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1511 27 354 MAP Kinase Kinase Gene Family AT4G26070 66.163 1.26e-165 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lal17g1511 Pkinase 3.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1511 K20603 - gmx:100789734 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1511 17 16487368 16494601 Lal17g1511 17 16487368 16494601 ECH
Lal19g1211 19 15479310 15486833 Lal17g1511 17 16487368 16494601 PCT
Lal17g1511 17 16487368 16494601 Lal19g1211 19 15479310 15486833 PCT