Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1508 ATGGACGGTGGCGCGTACAACCCACGATCGGTGGAAGCGGTTTTCCGGGACTTCAAGGGCCGTAGAGCCGCCATTGTTAAAGCTCTCACTACTGATGTGGTTGAATTTTATCAGCAGTGTGATCCTGAAAAGGAGAATCTTTGTCTTTATGGGTTCCCCAGTGAAAAATGGGAAGTTAATTTACCCGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCCAGGGATGGGATGCAAGAAAAGGACTGGCTTTCTTTGGTTGCTGTTCACAGCGATGCATGGCTACTTTCAGTGGCCTTCTACTTTGGGGCAAGATTTGGTTTTGACAGTAGTGACCGGAAACGCCTGTTCACTATGATTAATGATCTGCCAACAATATTTGAGGTTGTGACTGGAGCTGCAAAGAAACAGTCAAAGGAAAAGTCATCAGTTTCAAACCACACCAGCAACAAATCAAAGTCTGGTTCTAAAGGGCGAGCATCGGAGTCAAGGAAGTATACGAAGCAAGCAAATGATGAGGACGAGGAGGAGGAATTGGAATTGGACGACGATGATGAACATTGTGGTGCATGTGGGGAGAATTATACATCCGAATCTGTCGAGTTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCACGGTAAATGCGTGAAGATCACTCCTGCCCGGGCCGACCACATCAAGCATTATAAGTGCCCCTTATGCAGCAATAAGAGAGCGCGTCCTTGA 750 0.4693 MDGGAYNPRSVEAVFRDFKGRRAAIVKALTTDVVEFYQQCDPEKENLCLYGFPSEKWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDSSDRKRLFTMINDLPTIFEVVTGAAKKQSKEKSSVSNHTSNKSKSGSKGRASESRKYTKQANDEDEEEELELDDDDEHCGACGENYTSESVEFWICCDICEKWFHGKCVKITPARADHIKHYKCPLCSNKRARP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1508 249 CDD PHD_AL_plant 194 245 IPR044104 -
Lal17g1508 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 248 IPR013083 -
Lal17g1508 249 MobiDBLite consensus disorder prediction 144 187 - -
Lal17g1508 249 PANTHER CPG BINDING PROTEIN 4 249 IPR045104 GO:0006355|GO:0042393
Lal17g1508 249 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Lal17g1508 249 Pfam PHD-finger 194 245 IPR019787 -
Lal17g1508 249 SMART PHD_3 193 243 IPR001965 -
Lal17g1508 249 SUPERFAMILY FYVE/PHD zinc finger 186 246 IPR011011 -
Lal17g1508 249 ProSitePatterns Zinc finger PHD-type signature. 194 242 IPR019786 -
Lal17g1508 249 ProSiteProfiles Zinc finger PHD-type profile. 191 245 IPR019787 -
Lal17g1508 249 MobiDBLite consensus disorder prediction 163 178 - -
Lal17g1508 249 MobiDBLite consensus disorder prediction 144 162 - -
Lal17g1508 249 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1508 Lal-Chr17 16461772 16466748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1508 1 248 Alfin-like Transcription Factor Family AT3G42790 72.727 3.57e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal17g1508 Alfin 1.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1508 - - cpap:110817645 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1508 17 16461772 16466748 Lal20g1047 20 14332126 14339713 ECH
Lal17g1508 17 16461772 16466748 Lal8g0296 8 1986896 1990757 ECH
Lal17g1508 17 16461772 16466748 Lal10g1079 10 17747486 17751145 ECH
Lal17g1508 17 16461772 16466748 Lal21g0279 21 1847545 1850781 ECH
Lal17g1508 17 16461772 16466748 Lal4g0178 4 1117072 1121114 ECH
Lal17g1508 17 16461772 16466748 Lal17g1508 17 16461772 16466748 ECH
Lal17g1508 17 16461772 16466748 Lal21g1192 21 14717541 14723804 LSH
Lal17g1508 17 16461772 16466748 Lal4g1532 4 19424366 19428781 LSH