Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1506 ATGAAAATAGCAATGGATAATGCTCCTTATCCTTATGGCGATCAATTTTTTGGTGGATACTTATTTGCTTATGGACCACGGGCTATTAATCAATCCCAAATGTTACCTCAAATGTTGGGATTAACTTCAACCAGAGTTGCATTACCACTTGATCTTGCAGAAGACGGACCCATTTATATCAATGCGAAACAATACCATGCTATACTGAGAATGCGACAATCACGAGGAAAACTTGAGGCTTAA 243 0.3827 MKIAMDNAPYPYGDQFFGGYLFAYGPRAINQSQMLPQMLGLTSTRVALPLDLAEDGPIYINAKQYHAILRMRQSRGKLEA 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1506 80 ProSiteProfiles NF-YA/HAP2 family profile. 54 80 IPR001289 GO:0003700|GO:0006355
Lal17g1506 80 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 80 IPR001289 GO:0003700|GO:0006355
Lal17g1506 80 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 80 - -
Lal17g1506 80 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 57 80 IPR001289 GO:0003700|GO:0006355
Lal17g1506 80 Gene3D - 54 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1506 Lal-Chr17 16452624 16454164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1506 7 80 CCAAT-HAP2 Transcription Factor Family AT1G17590 49.333 3.00e-15 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal17g1506 CBFB_NFYA 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1506 K08064 - gmx:100777544 113.62