Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1504 ATGGGTGATGTTGGAAGTCCATTTATGTATTCATCCTCTCCTAAACCCTCTCCTTCATCAACCATCTACACCATACCCTTGTTGTACTATGGCCTAGTGGTGATTGGAACTGCAGCAATATTGCTAGTCATATACAACTTCATCATCATCAAATGTTGCAACAATAGGGTCCAAACTCAGCCATCACAAGCATCAGGGCATAGCCGAAGTTTGGTTGAATTAGTGGTCAATGAAAGTAGGAACTTTAACAACAACTCACAAAAAAGGAACTTTTTTTCAATCTCAAGCTTCGAGTACAAGAAAGAAGTGGTTGTGGGAAATGAAGGAGGAAAAGAAAAACAACAAGGTGGGGTTGATGATTATGAGTGTCCAATTTGCTTATCATTTTATGAAGAAGGGGATGAAGTGAAGAATCTACCACTTTGCAAGCACTCTTTTCATGCTATTTGCATAGACATGTGGCTTTATTCTCACTTTGATTGCCCAATTTGTAGAACACCTGTTGCTCCTTTCTGTCATCATCCTTTTCCAGCACAGAATTCTCATCTTGGCACCTATGTTTGA 564 0.3954 MGDVGSPFMYSSSPKPSPSSTIYTIPLLYYGLVVIGTAAILLVIYNFIIIKCCNNRVQTQPSQASGHSRSLVELVVNESRNFNNNSQKRNFFSISSFEYKKEVVVGNEGGKEKQQGGVDDYECPICLSFYEEGDEVKNLPLCKHSFHAICIDMWLYSHFDCPICRTPVAPFCHHPFPAQNSHLGTYV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1504 187 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Lal17g1504 187 SUPERFAMILY RING/U-box 118 171 - -
Lal17g1504 187 CDD RING-H2_EL5_like 122 165 - -
Lal17g1504 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 171 IPR013083 -
Lal17g1504 187 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 12 174 - -
Lal17g1504 187 Pfam Ring finger domain 122 165 IPR001841 -
Lal17g1504 187 SMART ring_2 123 164 IPR001841 -
Lal17g1504 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 174 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1504 Lal-Chr17 16447407 16447970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1504 16 169 C3H Transcription Factor Family AT1G04360 31.818 6.76e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1504 - - aprc:113852327 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1504 17 16447407 16447970 Lal17g1504 17 16447407 16447970 ECH
Lal19g1199 19 15418221 15418724 Lal17g1504 17 16447407 16447970 PCT
Lal17g1504 17 16447407 16447970 Lal19g1199 19 15418221 15418724 PCT