Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1499 ATGATCTTTGTTCAACCCTTATATTATATAATATCCTCTCTCATTCTCATACTTCATTCCTACCAATTTCTGTTTGTATTTCTCTTCCAAACTTTGCATTTGCTTGTGATCATGAATGGAAGAAACAGTAGCAGCATAAGTTACCCATTTACTCCATCACAGTGGCAAGAACTTGAGCATCAAGCTCTTATATATAAGTACATGGCTTCAGGTGTATCCATTCCACATGATCTTCTTTTCACTATCAAAAGAAGCTTTTTGGATTCTCCTATCTCTTCAAGCCTTTTGCCTAATCACTCAGGGTGGAACTATATGCAAATGGGTATTGGAAGAAAAATAGAGGCAGAGCCAGGTAGGTGCAGAAGAACAGATGGTAAGAAATGGAGATGCTCAAAAGAAGCATACCCAGATTCTAAGTACTGTGAGAGACACATGCACAGAGGCAAAAATCGTTCAAGAAAGCCTGTGGAACTTTTCAAAACACCAACAAATACAACAATCTCATCAACTACTCATCCTCTCTATAATCATCCACCATCAAGGTCAACTAGTATTGCTTTCTCATTTGAAGATAATAGTTTAACTGCTCCAGTTTTTCTTGCCACTGGCTCTTGTTCTCAGACTAATGTGGATAGCAGGAATAGATATGTTTATGGATTGAAAGAAGAGGTGGATGAACATGCTTCCTTCTCTACTTCATCAATGAATGATTCATGGAAACTCACACCATTGACAATGAGTTCTTCCTCTTCTTCCAAACAGAGAAGCTGCATTGGTTTATCCAATGACTACCCTTACTTGCAACTTCAAAACCTCAGTGACCATTCAAAACAGCTTCAAAATCAAGATCATGGTTGCTACAACATATTAGGGAGTAGTGCTAGTGATATCAAACATGAACCTCAGAAAACTGTTCATCATTTCTTTGATGAATGGCCTCATAAAAGTAGAGGATCATTGCTTGATTTGGATGATAAATCATCCACAACACAGTTATCAATTTCCATTCCCAACCTTCAATTCCACAACTCAACATGGTAA 1041 0.3766 MIFVQPLYYIISSLILILHSYQFLFVFLFQTLHLLVIMNGRNSSSISYPFTPSQWQELEHQALIYKYMASGVSIPHDLLFTIKRSFLDSPISSSLLPNHSGWNYMQMGIGRKIEAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELFKTPTNTTISSTTHPLYNHPPSRSTSIAFSFEDNSLTAPVFLATGSCSQTNVDSRNRYVYGLKEEVDEHASFSTSSMNDSWKLTPLTMSSSSSSKQRSCIGLSNDYPYLQLQNLSDHSKQLQNQDHGCYNILGSSASDIKHEPQKTVHHFFDEWPHKSRGSLLDLDDKSSTTQLSISIPNLQFHNSTW 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1499 346 ProSiteProfiles WRC domain profile. 114 158 IPR014977 -
Lal17g1499 346 ProSiteProfiles QLQ domain profile. 49 84 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal17g1499 346 Pfam WRC 115 157 IPR014977 -
Lal17g1499 346 PANTHER GROWTH-REGULATING FACTOR 6 47 339 - -
Lal17g1499 346 Pfam QLQ 49 82 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal17g1499 346 SMART QLQ_2 48 84 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal17g1499 346 PANTHER - 47 339 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1499 Lal-Chr17 16420127 16423296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1499 35 157 GRF Transcription Factor Family AT3G13960 63.200 2.13e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lal17g1499 WRC 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1499 - - gmx:100781613 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1499 17 16420127 16423296 Lal17g1499 17 16420127 16423296 ECH
Lal14g1655 14 16836122 16838395 Lal17g1499 17 16420127 16423296 PCT
Lal7g1057 7 16682201 16684708 Lal17g1499 17 16420127 16423296 PCT
Lal17g1499 17 16420127 16423296 Lal14g1655 14 16836122 16838395 PCT
Lal17g1499 17 16420127 16423296 Lal7g1057 7 16682201 16684708 PCT