Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1494 ATGATGAAAAGTAGTATATGGAAGTACATATTTGGTGGTTGTTATAAGGGTGAGTACCCCTCTGGTAGGTCAAAGAAAGTGGTGGGTACAAAACCAAACTGTTCTCATAGGATATCTCTAACAGATTTGAGTTATCCAAGCTTAACATTTTCAGAGGATCTATCTATTTCTCTAGCAGGGTCTAACCTGCATGTTTTTTCACTTGCTGAACTCAAAACTATCACACAGCACTTTTCTTCAAGCAATTTTCTTGGAGAAGGAGGGTTTGGGCCAGTACATAAGGGTTTCATTGATGACAAGCTTAGGCCTGGTCTTAAAGCTCAACCTGTGGCTGTTAAACTCTTGGACTTGGATGGCTCACAGGGTCATAAAGAATGGTTGACTGAAGTAGTTTTTCTGGGGCAACTAAGGCATCCACACCTTGTGAAGCTTATAGGATATTGTTGTGAAGAAGAACATAGGCTTCTGGTATATGAATATTTACCAAGAGGGAGCTTAGAAAATCAATTATTTAGAAGATTGTCAGCATCATTACCTTGGTCAACAAGAATGAAAATTGTTGTTGGAGCTGCAAAGGGTCTAGCCTTTCTTCATGAAGCAGAGAAACCAGTCATATATAGAGATTTCAAAACATCTAATATTTTGTTAGACTCAGATTACAATGCCAAACTCTCTGATTTTGGATTGGCTAAAGATGGCCCAGAAGGAGATGACACACATGTTTCAACCAGAGTTATGGGTACACAAGGATATGCAGCACCAGAATATGTCATGACAGGTCACTTGACAGCAATGAGTGATGTGTATAGCTTTGGAGTAGTGTTGTTAGAGATCCTAACAGGTAGAAAATCAGTGGACAAAAATCGTCCTCAAAGGGAGCATAACTTAGTGGAATGGGCAAGGCCAATGTTAAATGATTATAGGAAACTTAGTAGGATAATGGACCCTACACTTGAAGGGCAGTTCTCTGAGTTAGGGACTAAAAAAGCAGCAGCATTAGCTTATCAATGCCTTAGCCATAGACCAAGGAGTAGACCATCAATGAGCACAGTGGTTAAGACTCTAGAACCCCTTCAACATTTTCATGATGTTCCAATTGGACTCTTTGTTTATACAGTTCCACTTGATAATACTCAAGTACTAAGACACAAGGATGCTAAAGAACATCATCAACTGCCTAATGAAACAAACACCCAAAATCATCACCATCATCATCATCATCATCATCGCCGGATTCACCATCATAACAACGCTGCCCATCCGCCTCATCCACTTAAATCGCCGAAGCCGCAATTGCAGTTGCAGAGTGACAAATCAGATAGGGCAAAGAAGAATAATTTAGCATGA 1347 0.4001 MMKSSIWKYIFGGCYKGEYPSGRSKKVVGTKPNCSHRISLTDLSYPSLTFSEDLSISLAGSNLHVFSLAELKTITQHFSSSNFLGEGGFGPVHKGFIDDKLRPGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRLSASLPWSTRMKIVVGAAKGLAFLHEAEKPVIYRDFKTSNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLEILTGRKSVDKNRPQREHNLVEWARPMLNDYRKLSRIMDPTLEGQFSELGTKKAAALAYQCLSHRPRSRPSMSTVVKTLEPLQHFHDVPIGLFVYTVPLDNTQVLRHKDAKEHHQLPNETNTQNHHHHHHHHHRRIHHHNNAAHPPHPLKSPKPQLQLQSDKSDRAKKNNLA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1494 448 MobiDBLite consensus disorder prediction 393 448 - -
Lal17g1494 448 Pfam Protein tyrosine and serine/threonine kinase 82 355 IPR001245 GO:0004672|GO:0006468
Lal17g1494 448 Gene3D Phosphorylase Kinase; domain 1 42 160 - -
Lal17g1494 448 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Lal17g1494 448 MobiDBLite consensus disorder prediction 400 420 - -
Lal17g1494 448 Gene3D Transferase(Phosphotransferase) domain 1 161 364 - -
Lal17g1494 448 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 22 404 - -
Lal17g1494 448 ProSiteProfiles Protein kinase domain profile. 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1494 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Lal17g1494 448 PANTHER OS01G0588500 PROTEIN-RELATED 22 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1494 Lal-Chr17 16375334 16382295 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1494 23 391 Glycoside Hydrolase AT3G07070 46.154 9.91e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal17g1494 PK_Tyr_Ser-Thr 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1494 - - gmx:100797003 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1494 17 16375334 16382295 Lal18g0113 18 906732 909570 ECH
Lal17g1494 17 16375334 16382295 Lal4g0184 4 1152221 1154492 ECH
Lal17g1494 17 16375334 16382295 Lal17g0175 17 1063852 1071060 ECH
Lal17g1494 17 16375334 16382295 Lal17g1494 17 16375334 16382295 ECH
Lal7g1050 7 16637408 16639756 Lal17g1494 17 16375334 16382295 PCT
Lal19g1193 19 15348507 15351211 Lal17g1494 17 16375334 16382295 PCT
Lal17g1494 17 16375334 16382295 Lal7g1050 7 16637408 16639756 PCT
Lal17g1494 17 16375334 16382295 Lal19g1193 19 15348507 15351211 PCT