Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1483 ATGTCTAGTTCATCGGAGTACTCAGAGTTTTCCGGCCAGAAGCCGGTGAGGTTGCCGGAGAAAACAAGTTTCTCTCATACTTGTAGTCTATTGAGTCAATACATGAAGGAGAAGGGTAGTTTTGGAGATCTTACCATCGGGATGACATGTAACAAAGAACAAAGTGGGTCACCTGAGACATCTTGTCAATCTGCAACAACCATGAATTTGTTTCCTACTAAAGAAAATAACATAGCACCAAAGAACCTGATAGCTCTGGATTTGCTCTCTCCACAAGCTGCTTTTCGCCCCCATCTTCCGGCCCAAGAGATCAATTCTAGTGTAATTGTGCCAGTGAGCAAGGGATCTAAAGCTGCACAATTGACAATCTTTTATGCTGGACAAGTTATTGTTTTCAATGATGTTCCGGCCGATAAAGCCGACGAGCTAATGTCCTTTGCCAGCAAAGGAGTCTCCCAAAGCCAGAACCATTTTGTTCAAACATGCACTAGTAGCCAACCTTCATTTCCTCATAATTTAGTCAGAACTTTTGCTGATTCAATTACTCCTAATGTGAATATCATCTCTTGTACCGACACCAATTTGATTCTTCGACAACCTCAACCATCATCTAGACCTGTTGTTTGTGATCTACCAATTGCTAGGAATGCTTCACTTCATAGGTTCTTGGAGAAGAGAAAAGATAGAATTGCAGCCAAAGCACCATATCAAATGAAAAATCACATTTTTTCTGCTAATAAGCCAATTGAATCTATGTCATGGCTTGGCTTGGGAGCTAAATCATCTCAACCCTGA 795 0.4126 MSSSSEYSEFSGQKPVRLPEKTSFSHTCSLLSQYMKEKGSFGDLTIGMTCNKEQSGSPETSCQSATTMNLFPTKENNIAPKNLIALDLLSPQAAFRPHLPAQEINSSVIVPVSKGSKAAQLTIFYAGQVIVFNDVPADKADELMSFASKGVSQSQNHFVQTCTSSQPSFPHNLVRTFADSITPNVNIISCTDTNLILRQPQPSSRPVVCDLPIARNASLHRFLEKRKDRIAAKAPYQMKNHIFSANKPIESMSWLGLGAKSSQP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1483 264 Pfam tify domain 117 148 IPR010399 -
Lal17g1483 264 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 258 IPR040390 -
Lal17g1483 264 Pfam Jas motif 212 237 IPR018467 -
Lal17g1483 264 SMART tify_2 114 149 IPR010399 -
Lal17g1483 264 PANTHER PROTEIN TIFY 10A 20 258 - -
Lal17g1483 264 ProSiteProfiles Tify domain profile. 114 149 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1483 Lal-Chr17 16279601 16282714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1483 1 260 Tify Gene Family AT1G19180 41.328 2.42e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal17g1483 tify 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1483 K13464 - gmx:100801449 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1483 17 16279601 16282714 Lal17g1483 17 16279601 16282714 ECH
Lal17g1483 17 16279601 16282714 Lal21g1182 21 14630503 14633553 LSH
Lal17g1483 17 16279601 16282714 Lal4g1510 4 19273028 19276359 LSH
Lal14g1638 14 16747697 16752164 Lal17g1483 17 16279601 16282714 PCT
Lal7g1044 7 16583394 16585491 Lal17g1483 17 16279601 16282714 PCT
Lal19g1186 19 15294520 15297914 Lal17g1483 17 16279601 16282714 PCT
Lal17g1483 17 16279601 16282714 Lal14g1638 14 16747697 16752164 PCT
Lal17g1483 17 16279601 16282714 Lal7g1044 7 16583394 16585491 PCT
Lal17g1483 17 16279601 16282714 Lal19g1186 19 15294520 15297914 PCT