Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1481 ATGGCCACTACACAAATCACAGCAATTTCAATTTCTTCAAAGAACATGGCATTGTTTGAAGGTCTCCGACCTTCAGCAGTTAAGTTTCCATTCAAAATTGGAAATTTAACACAAAGATCTTTCAAGGGCATGGTTGTTAAAGCAGCCACTGTAGTTGCCCCTAAGTATACCGCTATTAAACCTCTGGGGGATAGAGTTCTCGTAAAAATCAAGGAAGCTGAAGAGAAGACAGAAGGTGGGATTTTGCTTCCCACAACCGCACAAACTAAGCCTCAAGGGGGTGAGGTGGTTGCTATTGGTGAAGGAAAGACATTTGGAAAGAGCAAAGTGGACATTAGTGTGAAGTCGGGCGAACAAGTGATATATTCGAAGTATGCGGGCACTGAGGTGGAGTTCAATGGTACAAAGCATCTTATATTGAAGGACGATGACATTGTTGGTATCCTTAACACCGATGATGTCAAGGATCTTAAACCCTTGAATGATAGAGTCCTGATAAAGGTTGCAGAAGCTGAGGAAAGGACCGCAGGCGGTTTGTTGCTTACAGAGGCAACCAAGGAGAAACCTTCTGTTGGAACAGTAATTGCAGTTGGTCCAGGGCCTTTGGATGAGGAAGGTAACAGAAAACCTTTGTCTGTTACTCCAGGGAACAATGTATTGTACTCAAAATATGCTGGAACTGATTTCAAGGGCAAAGATGGTTCTGACTACATTGCCTTGAGGGCCTCAGATGTTATAGCTGTCCTCTCTTAG 753 0.4343 MATTQITAISISSKNMALFEGLRPSAVKFPFKIGNLTQRSFKGMVVKAATVVAPKYTAIKPLGDRVLVKIKEAEEKTEGGILLPTTAQTKPQGGEVVAIGEGKTFGKSKVDISVKSGEQVIYSKYAGTEVEFNGTKHLILKDDDIVGILNTDDVKDLKPLNDRVLIKVAEAEERTAGGLLLTEATKEKPSVGTVIAVGPGPLDEEGNRKPLSVTPGNNVLYSKYAGTDFKGKDGSDYIALRASDVIAVLS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1481 250 CDD cpn10 59 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 ProSitePatterns Chaperonins cpn10 signature. 59 83 IPR018369 GO:0005524|GO:0006457
Lal17g1481 250 Hamap Co-chaperonin GroES [groES]. 156 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 SMART Cpn10_2 58 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 SMART Cpn10_2 156 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 CDD cpn10 157 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 PANTHER GROES CHAPERONIN 1 250 - -
Lal17g1481 250 SUPERFAMILY GroES-like 57 150 IPR011032 -
Lal17g1481 250 Pfam Chaperonin 10 Kd subunit 157 248 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 Pfam Chaperonin 10 Kd subunit 59 148 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 SUPERFAMILY GroES-like 156 249 IPR011032 -
Lal17g1481 250 Hamap Co-chaperonin GroES [groES]. 58 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 ProSitePatterns Chaperonins cpn10 signature. 157 181 IPR018369 GO:0005524|GO:0006457
Lal17g1481 250 PIRSF Cpn21 1 250 IPR017416 GO:0006457|GO:0046914|GO:1901671
Lal17g1481 250 Gene3D GroES chaperonin 51 151 IPR037124 GO:0006457
Lal17g1481 250 Gene3D GroES chaperonin 152 250 IPR037124 GO:0006457
Lal17g1481 250 PRINTS 10kDa chaperonin signature 59 74 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 PRINTS 10kDa chaperonin signature 81 102 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 PRINTS 10kDa chaperonin signature 115 127 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal17g1481 250 PRINTS 10kDa chaperonin signature 136 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1481 Lal-Chr17 16247582 16250450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1481 1 250 Calmodulin-binding Proteins AT5G20720 74.308 1.19e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1481 K04078 - gmx:100814751 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1481 17 16247582 16250450 Lal17g1481 17 16247582 16250450 ECH
Lal17g1481 17 16247582 16250450 Lal21g1179 21 14532484 14536024 LSH
Lal17g1481 17 16247582 16250450 Lal4g1506 4 19222039 19229095 LSH
Lal7g1043 7 16571606 16581855 Lal17g1481 17 16247582 16250450 PCT
Lal19g1183 19 15269394 15272104 Lal17g1481 17 16247582 16250450 PCT
Lal17g1481 17 16247582 16250450 Lal7g1043 7 16571606 16581855 PCT
Lal17g1481 17 16247582 16250450 Lal19g1183 19 15269394 15272104 PCT