Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1480 TGCAAAGTTCTGATTTTGCAGCATGGGCTTAACTTGTTTTCCCATTTTCTGGATTTTTGTCCTATTCAAGATTCATCACTAATATTTGAGCTTGAGTCCGTGGATGTTAAAGTTGTAATGAAGGCTCCTACAAATGGTTGCTTGTCTAATTCTTCTGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTACCTCCGGTTGGAAGCCTTGTTGTTTACTTTCCTCAAGGACACAGCGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCCGACTTTGTACCCAGTTACCCAAATCTTCCGTCCAAATTGATTTGCATGCTTCATAATGTTGCCTTGCATGCTGATCTTGAAACAGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTGGCATCGGACATGGGTCTCAAACAAAACCAACAACCGACTGAGTTCTTTTGCAAAACTCTTACAGCAAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATGTTCCCACCTCTGGATTTTTCGATGCAACCTCCAGCCCAGGAAATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGCGGACAACCGAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTAAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTCTAGGTATAAAACGTGCAAATAGACAGCAACCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGAATTCTTGCGGCTGCAGCTCATGCCGCTTCAAATAATAGCCCATTTACGATATTTTATAATCCAAGGGCCAGCCCCTCGGAATTTGTGATTCCATCGGCCAAGTATAATAAGGCCTTGTACACTCAAGTTTCTCTCGGAATGAGATTTAGAATGATGTTTGAGGCCGAGGATTCTGGAGTGCGTAGATATATGGGTACAATCACCGGGATCAGTGACTTAGATCCTGTTCGATGGAAGAATTCACAGTGGCGCAACCTTCAGGTTGGATGGGATGAATCAACAGCCGGCGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCGGTAGTGACCCCTTTCTACATTTGTCCACCTCCATTTTTTCGTCCCAAGTTCCCCAAGCAACCAGGAATGCCAGAAGATGAGTCGGATATAGAAAATGCTTTCAAGAGGGCTATGCCTTGGCTTGGAGATGACCTTGGCATGAAGGATGCCTCAAGTTCATTATTTCCTGGTTTGAGCTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCAATCCTGCTCAATCAGGTTATTTCCCTCCATCAATGATTTCATCTAATACCCTTCACGGTAACCTTAACACTGATGATCCGTCCAAGTTATTGAACTTTCAAGCCCCACCAAGTCTTCAATTTAACAAACCTAACGTACCGAATCTAGTCAATCAAATGCAACAATCCCCTACATCATGGCCTCAACAGCAGCATCAGCAGCAGCAGAAGATGCAGTCATTGATGCAAACGCCGATGAACCAGCTCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGAGGCAACAACAATTTTCGGAACCACAAAATGTTCCACAGCCACAGCAACAACAGCCCCAACTGCCTCAACAGAGAGCTCAGCAGCTGCAACAACAGCAACAGTTGTCTCAGCAGTCCATCATGAATAACGGTGCAATTACTTCTAACCAAATTCCAAATCAGTGTGTACAGCAACAAGTACCGTACTCTCAGCTTCAGCAACAGCAATTACTCTCAAGCAATATCCCACCCCAACAAAGCGTTCAATCAGCCAGCAAAAACACGTTGCTAATGACATCCCTACCACAAGACTCACAATATCAACAACAGATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAGACGCAGTTGCAACAATCTCCATTGCACTTATTGCAACAAAGCATGTCACAGAGGGCTTCACAGCAACCACAAGTTACATCAATGTCACAGCAAAACCCCTCAGAGCAACAACTACAATTGCAGTTGCTACAGAAATTGCAGCAGCAGCAACAACAACTTCTTTCCTCATCTAGCCCGCTTTTGCAGTCTCAGTTTCTACAGCAGCAGCAAAATCTTCAACAAAATCAGAAGTTACCGCAGCTGCCCCTATCACCGCATCAGTCTCAACAACTTGGCAACAATGCTTTCTCAATGGAGAAGCTTCTCAACACCAACAACAACTTCTCTTCTTCGGCTCTGATGCAATCACAACAACTTCCGATGAACCAATCCCTGAATACACAGAAATCACTTCCGAATATTAGAGGTCCATCCAGTCTTACAGATGCAGAAGCCCCATCATGCTCAACTTCACCATCTACTAACAATTGCCAAATATCTCCACCAAACCTTCTGAAGAGAAATCATCAAGTACCATCCACATTAGGGGGAACTTCAGTAATGGAGCCCACAAGTAATCTTATACAAGAGCTTCACAGTAAGCCGGACATTCAAATCAAACATGAATTATCCGGCGTGAAAGGACCTGACCAGCTAAAATATAAAGGAACAATCGGTGATCAGCTGGAAGCTTCTTCTTCGGGAACATCTTACTGTATTGATCCTGCTAACATCCATCAGAACTTTCAACTCCCTAACTTCTGCATGGATGGGGATGTCCAATCACACCCTCGAAGCAATATACCATTTACCTCGAATCTTGATGGATTAACACCTGATACTTTTCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAGAACTTGTTGTCTCATTATGGTAGTGCTCCAAGAGACATTCAAACTGAGCTGTCCACGGCTGACATCAGTCCCCAGTCATTTGGGGTGCCAAACATGCCTTTTAAGCCTGGTTGTTCAAATGATATGGCCATCAATGATACCGGGATTTTGAGTAGTGGCCCGTGGGCTAACCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAAGTTGGCTCTGTTGGAAGATGTATTGATGTCACTCGTTACAAAGGATACGATGAACTCCGGCATGATTTAGCTCGCATGTTTGGGATTGAAGGGCAACTTGAAGATCCTCAAAGGACCGAGTGGAAACTAGTGTATGTGGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTTAGCTGTGTCCTGAGCATAAAGATATTATCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGAGGTCATGTTCCAATCTCCAATCAAACTTGTAGTGGAACAGAAAGTGGCATTGCATGGAGGGGACAGTATGATGATAATTCTGCAGGCTCATTTAATAGATAA 3468 0.4377 CKVLILQHGLNLFSHFLDFCPIQDSSLIFELESVDVKVVMKAPTNGCLSNSSEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADLETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKMFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPSAKYNKALYTQVSLGMRFRMMFEAEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDDLGMKDASSSLFPGLSLVQWMSMQQNNQFNPAQSGYFPPSMISSNTLHGNLNTDDPSKLLNFQAPPSLQFNKPNVPNLVNQMQQSPTSWPQQQHQQQQKMQSLMQTPMNQLQQQQQQQQQQQRQQQFSEPQNVPQPQQQQPQLPQQRAQQLQQQQQLSQQSIMNNGAITSNQIPNQCVQQQVPYSQLQQQQLLSSNIPPQQSVQSASKNTLLMTSLPQDSQYQQQIDQQASLLQRQQQQTQLQQSPLHLLQQSMSQRASQQPQVTSMSQQNPSEQQLQLQLLQKLQQQQQQLLSSSSPLLQSQFLQQQQNLQQNQKLPQLPLSPHQSQQLGNNAFSMEKLLNTNNNFSSSALMQSQQLPMNQSLNTQKSLPNIRGPSSLTDAEAPSCSTSPSTNNCQISPPNLLKRNHQVPSTLGGTSVMEPTSNLIQELHSKPDIQIKHELSGVKGPDQLKYKGTIGDQLEASSSGTSYCIDPANIHQNFQLPNFCMDGDVQSHPRSNIPFTSNLDGLTPDTFLSRGYDSQKDLQNLLSHYGSAPRDIQTELSTADISPQSFGVPNMPFKPGCSNDMAINDTGILSSGPWANQTQRMRTYTKVQKVGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVLSIKILSSAEVQQMSLDGDLGGHVPISNQTCSGTESGIAWRGQYDDNSAGSFNR 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1480 1155 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal17g1480 1155 Pfam AUX/IAA family 1024 1113 IPR033389 -
Lal17g1480 1155 Gene3D - 1022 1116 - -
Lal17g1480 1155 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Lal17g1480 1155 PANTHER AUXIN RESPONSE FACTOR 19 40 1142 - -
Lal17g1480 1155 SUPERFAMILY DNA-binding pseudobarrel domain 155 294 IPR015300 -
Lal17g1480 1155 Gene3D - 328 399 - -
Lal17g1480 1155 MobiDBLite consensus disorder prediction 804 841 - -
Lal17g1480 1155 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 1142 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal17g1480 1155 CDD B3_DNA 164 256 IPR003340 GO:0003677
Lal17g1480 1155 MobiDBLite consensus disorder prediction 689 710 - -
Lal17g1480 1155 Gene3D - 162 266 IPR015300 -
Lal17g1480 1155 SMART B3_2 165 267 IPR003340 GO:0003677
Lal17g1480 1155 SUPERFAMILY CAD & PB1 domains 1041 1104 - -
Lal17g1480 1155 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Lal17g1480 1155 MobiDBLite consensus disorder prediction 485 596 - -
Lal17g1480 1155 ProSiteProfiles PB1 domain profile. 1027 1120 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1480 Lal-Chr17 16233046 16246817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1480 40 1155 B3 DNA Binding Superfamily AT1G19220 60.789 0.0 1203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal17g1480 AUX_IAA 1.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1480 K14486 - gmx:100804628 1598.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1480 17 16233046 16246817 Lal17g1480 17 16233046 16246817 ECH
Lal17g1480 17 16233046 16246817 Lal4g1505 4 19217790 19228077 LSH
Lal14g1637 14 16738705 16746000 Lal17g1480 17 16233046 16246817 PCT
Lal7g1042 7 16564862 16572735 Lal17g1480 17 16233046 16246817 PCT
Lal17g1480 17 16233046 16246817 Lal14g1637 14 16738705 16746000 PCT
Lal17g1480 17 16233046 16246817 Lal7g1042 7 16564862 16572735 PCT