Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1479 ATGGAACTCAATTCCATAGCTCTGGAATTTGGTTTCTTTCTTCTGCTCCATTTGCTTCTTGTTGTTCATGGACTTGTACCCAATGTGACACTTAATGAGACTTGTGGTAATTCATCTGGTTCTTTCAGAAGACACACCAAAGAACTATGCCCGACTGGTTGGGTGATCGACCCTAATAAAACCAAATGCTTTCTCCATGTTGGGAGGTCAAAATCCTGGAATGAGTCAGAAACCTGTTGTAATATCTATGGTGGACATTTAGCATCCTTGAAATCACTTCAGGAACTGCACTTTGCTCAGAGTCTATGTAGTGGATTGACAAATAGTTGTTGGATTGGTGGAAGAAGAGCCAACTACACTGCCAGTTATGAGTGGGCGTGGTCTGATAATTCTCGGTGGAATTCATCGATATTTCATATGGCCAATTTTTCATCCAATTGTACTCTACACTCCTGTTATATGAACTACACAGACGACTTATGTACATTAATGACTAATTCAAGCACTCTGGTTGGTGAGAGATGCGGCAATCCTCATTCTTCTGTATGTGTACTTGATATAGATACGAAATGTGTTCATATGCACTGCCATAAGGAATACCTTATCATCCTTGCAGTGGTGAGTGCAGTGATACTCTCCACAACATTAGGAGTGGTGGTCTGGCTTCTTGTATATAAGCGGGGCAAGAAGAGAAGACGGTCGAGAAAACTATATGACCCGGCAGCTTCTCTTCCTTCATGGAAAGTCTTCACCAAAGATGAATTAAGGTCGATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATGCCAAGACGGGTGGTACATACAGTGGCGTCCTACCAGATGGCACAAGGGTTGCAGTTAAGCGATTAAAGAGGTCAAGCTTTCAGAGGAAAAAGGAGTTCTATTCGGAAATTCGCAGGGTAGCTAGGCTTTGCCATCCAAATCTGGTGACTGTGATGGGTTGCTGCTATGGTCATGGTGATCGCTACATTGTTTATGAGTTTGTAGCCAATGGGCCCCTAGATAAATGGCTACACCACATACCAAGGGGAGGTCGCAGCTTGGATTGGGCTATGAGGATGAAAATTGCTACAACGCTTGCTCAAGGAATTGCCTGCAATATTATGACTGCAATTGCAGTTATGGACCACAATTTAAAACCATGGATCTTTCATTTGTTGTATCCTGTGCTATCTTCAGTTGCAGGTTTGAGGTTTCTGCATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGTGCCAGTAACGTACTGCTGGATGAGGAGTTTGGAGCACACCTTATGGGTGTTGGTCTGTCCAAGTTTGTGCCATACGAAGTGATGCACGAGAGGACTGTGATGGCAGGTGGAACTTATGGATACCTCGCGCCAGAGTTTGTGTACAGAAATGAGCTTACAACAAAGAGTGACGTCTACAGTTTCGGTGTCCTACTACTTGAAATAGTGAGTGGACGCCGACCTGCACAGCCAGTTGATTCTGTTGGTTGGCAGAGTGTATTTGAATGGGCTACACCCCTCGTTCAAGCGCATCGATATCCCGAACTCTTGGATTCTCATATAACCTCCTCCTCTACTAGTATCATCCCGGAGGCTAGTACCATCCAGAAGGTGGTTGACCTTGTCTATTCTTGCACACAGCATGTCCCGTCGATGCGCCCTAGAATGTCTCATGTTGTTCATCAGCTACAACAGCTTTCCCAGCCATCTTCAAAGTAA 1749 0.4443 MELNSIALEFGFFLLLHLLLVVHGLVPNVTLNETCGNSSGSFRRHTKELCPTGWVIDPNKTKCFLHVGRSKSWNESETCCNIYGGHLASLKSLQELHFAQSLCSGLTNSCWIGGRRANYTASYEWAWSDNSRWNSSIFHMANFSSNCTLHSCYMNYTDDLCTLMTNSSTLVGERCGNPHSSVCVLDIDTKCVHMHCHKEYLIILAVVSAVILSTTLGVVVWLLVYKRGKKRRRSRKLYDPAASLPSWKVFTKDELRSITKNFSEGNRLVGDAKTGGTYSGVLPDGTRVAVKRLKRSSFQRKKEFYSEIRRVARLCHPNLVTVMGCCYGHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIACNIMTAIAVMDHNLKPWIFHLLYPVLSSVAGLRFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQPVDSVGWQSVFEWATPLVQAHRYPELLDSHITSSSTSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQLSQPSSK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1479 582 ProSiteProfiles C-type lectin domain profile. 59 184 IPR001304 -
Lal17g1479 582 Gene3D Transferase(Phosphotransferase) domain 1 339 582 - -
Lal17g1479 582 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 405 578 - -
Lal17g1479 582 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 376 - -
Lal17g1479 582 ProSiteProfiles Protein kinase domain profile. 263 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g1479 582 SUPERFAMILY Protein kinase-like (PK-like) 235 573 IPR011009 -
Lal17g1479 582 Pfam Protein tyrosine and serine/threonine kinase 277 573 IPR001245 GO:0004672|GO:0006468
Lal17g1479 582 SMART CLECT_2 50 184 IPR001304 -
Lal17g1479 582 Gene3D Phosphorylase Kinase; domain 1 238 338 - -
Lal17g1479 582 SMART tyrkin_6 210 573 IPR020635 GO:0004713|GO:0006468
Lal17g1479 582 PANTHER - 1 376 - -
Lal17g1479 582 PANTHER - 405 578 - -
Lal17g1479 582 CDD CLECT 62 183 - -
Lal17g1479 582 Gene3D - 34 186 IPR016186 -
Lal17g1479 582 Pfam Lectin C-type domain 70 183 IPR001304 -
Lal17g1479 582 SUPERFAMILY C-type lectin-like 45 186 IPR016187 -
Lal17g1479 582 ProSitePatterns Tyrosine protein kinases specific active-site signature. 418 430 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1479 Lal-Chr17 16206945 16212084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1479 80 579 Receptor kinase-like Gene Family AT1G52310 65.226 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Lal17g1479 PK_Tyr_Ser-Thr 4.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1479 - - gmx:100779497 852.432