Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1474 ATGATGTTATATTCTCAGGGTTCATCAAGACATTGTAGGCTACTTGCTGTTCTAAGTGGTAAATCAGGTGACAATAAACAAAAGCAGAAGCAGAATGCTGCTTCTGAGGATCAATCCCTTTACCCTTTTCCTGAGCTTTCTTCCTCCGGCCGCCTCGAGGTTAAAGTTTTGACGAAACCTACTGCTGATGAACTCGGTCGAGTTATTGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGCGAGCAGCTGCAAGGTAGTGCAGAAATTGGGCCTCTTGTATGGGATGATTTTGACCTGTCTGTTCCAGAAGCCTTATGTGGATTATTTTCTTCCAAATTACCTAGTACTATTTATTTGGAAACTCCGAACGGAGAAAAGTTGGCAGAGGCTCTTCATTTTAAGGGAGTTCCTTATACAATATATTGGAAAAATGAATTTTCAAAATATGCAGCTTCACATTTTCATCAAGCATTTTTCTCAGTGGCACAGAGTACATCAAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCGTTTAAACTTTACTGTGTACAAAACAATGTCTTACCTTCTAATAGCGAGAAGAGCGGTGGCAAGCTTGAGCCGCAAATTCTGGGGGACCCTCCCAACATTGATATTAGTCCATGTGAAGCAGACATGAAGGAGGAGGAGGAGGAAGGTTCACCCGAGACTATTTCTTCCGTAAAGATATATGATGATAATGTAAACATGAGATTTCTTGTTTGCGGAGTTCCCTGCACGTTGATACGTGGATGTAAACTTCACAACCGGACAAGTGCTCCACCACCACCTCTTCAGGCAGGAACTTTTTCACGCGGTGTGGTGACCATGCGTTGCGATATATCTACAAGTAGTTCTGCGCATATATCACTTTTGGTGTCTGGTAGTGGTGATACTTGTTTTAACGACCAGGCAAGGGTGAATTATGTTTCCAGGCTTTTGGAGAACCACATTAAAAAGGAGCTCATAGAGAAGATTCAGCTAGTCCAGGCATTTCCTATTGATCAACAAAACAAATTATCTTTTTCTGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCCAGTGTTTTTGAAGTCTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTGCGACAACTCGCACCAAATGTGTCATATCGCAGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGACTGCCAGTTGCATCTTTTAATAAGGATGATGCCGAACGCCTCCTTTTCTTTTGTACTAAGCAGGAGAAGGAAAACTGTTCCAATGATCCCATTGTCTATGGGTATCCTAGTTGGCTGATGCCTCCACCACCTAGTCGAAAAAGATCCGAACCACGCTCTAAAACAAAGTCTACGAATGCTAGTGGGCTGGAAGTTGAGAATGCTGGTAGTTATAGACAGAAATTAAATTTGGCTGCAATGAGGCCAATCCCTCAATCTAATCGTCACAAGATTCTACCGTTTTCTGGATTTTCTGGGGGTGAAAGATATGATGGAGATATTGGAAAATCAAATCAGCTACTTGCTCCTATTAAGCATACTGTTGTAGGCTCTAATTCAGCCCCACATAGGAAGTCTGTGTCAAACTCAATTCAAGCCCATCAGATTATTTCTTTGAATCCGCTACCTATGAAAAAGCATGGCTGTGACAGAGCTCCAATACGAGCTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTCTGATGCTTCGGGGACATACTCGTCTCATTCCACAAGGTGGGCTTGCTGGTTTCCCTGATGCTGTTCTGAATGCAAAACGCCTTGACCTTTTCAATTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGAATCAATTGGAAAGGCCAAATTTTCTCAAAGATGCGCAATCACACTTTGACAAACAGAATGACTGGCGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTTTTAGAATATGAATTAGCTCATGATGACGTAGATGGAGAGTGCTGCTTGTTATGTCACAGTAGTGCAGCGGGTGACTGGGTGAACTGCGGTATATGTGGTGAGTGGGCTCACTTTGGCTGTGACAGGCGGCAGGGACTTGGAGCATTTAAGGATTATGCTAAAACCGATGGACTGGAGTACGTTTGTCCGCACTGCAACATATCGAATTTTAGTAAAAAATCTCAGAAAACTGCAAATGGATATTAA 2229 0.4302 MMLYSQGSSRHCRLLAVLSGKSGDNKQKQKQNAASEDQSLYPFPELSSSGRLEVKVLTKPTADELGRVIEQLQPDFVYLQGEQLQGSAEIGPLVWDDFDLSVPEALCGLFSSKLPSTIYLETPNGEKLAEALHFKGVPYTIYWKNEFSKYAASHFHQAFFSVAQSTSSHTWDAFQLALASFKLYCVQNNVLPSNSEKSGGKLEPQILGDPPNIDISPCEADMKEEEEEGSPETISSVKIYDDNVNMRFLVCGVPCTLIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSGDTCFNDQARVNYVSRLLENHIKKELIEKIQLVQAFPIDQQNKLSFSEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRSLVMLGVASIQGLPVASFNKDDAERLLFFCTKQEKENCSNDPIVYGYPSWLMPPPPSRKRSEPRSKTKSTNASGLEVENAGSYRQKLNLAAMRPIPQSNRHKILPFSGFSGGERYDGDIGKSNQLLAPIKHTVVGSNSAPHRKSVSNSIQAHQIISLNPLPMKKHGCDRAPIRACSEEEFLRDVMQFLMLRGHTRLIPQGGLAGFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQIFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCNISNFSKKSQKTANGY 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1474 742 MobiDBLite consensus disorder prediction 443 467 - -
Lal17g1474 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 732 IPR013083 -
Lal17g1474 742 MobiDBLite consensus disorder prediction 22 44 - -
Lal17g1474 742 SMART ARID_2 562 665 - -
Lal17g1474 742 CDD PHD_ARID4_like 675 726 - -
Lal17g1474 742 Pfam ARID/BRIGHT DNA binding domain 568 665 IPR001606 GO:0003677
Lal17g1474 742 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 742 IPR042293 -
Lal17g1474 742 SUPERFAMILY ARID-like 566 680 IPR036431 GO:0003677
Lal17g1474 742 Gene3D - 562 668 IPR036431 GO:0003677
Lal17g1474 742 SUPERFAMILY FYVE/PHD zinc finger 668 730 IPR011011 -
Lal17g1474 742 CDD ARID 567 665 - -
Lal17g1474 742 ProSiteProfiles ARID domain profile. 565 669 IPR001606 GO:0003677
Lal17g1474 742 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1474 Lal-Chr17 16111934 16120325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1474 2 741 ARID Transcription Factor Family AT3G43240 62.598 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal17g1474 ARID 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1474 - - gmx:100775894 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1474 17 16111934 16120325 Lal21g1167 21 14343081 14350268 LSH